Protein : Qrob_P0572980.2 Q. robur
Protein Identifier  ? Qrob_P0572980.2 Organism . Name  Quercus robur
Score  19.3 Score Type  egn
Protein Description  (M=1) PTHR11618//PTHR11618:SF23 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED // SUBFAMILY NOT NAMED (PTHR11618:SF23) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 549  
Kegg Orthology  K15196
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa026349mg 5 540 + 536 Gaps:19 99.45 542 59.55 0.0 hypothetical protein
blastp_kegg lcl|pmum:103324940 5 540 + 536 Gaps:19 99.45 542 59.55 0.0 uncharacterized LOC103324940
blastp_kegg lcl|rcu:RCOM_1457950 5 538 + 534 Gaps:14 99.25 532 60.04 0.0 hypothetical protein
blastp_kegg lcl|gmx:100796841 5 540 + 536 Gaps:22 98.88 536 60.19 0.0 transcription factor IIIB 50 kDa subunit-like
blastp_kegg lcl|vvi:100261683 2 540 + 539 Gaps:12 99.43 530 56.17 0.0 uncharacterized LOC100261683
blastp_kegg lcl|cic:CICLE_v10031207mg 5 540 + 536 Gaps:12 99.62 530 58.90 0.0 hypothetical protein
blastp_kegg lcl|cit:102623089 5 540 + 536 Gaps:12 99.62 530 58.52 0.0 uncharacterized LOC102623089
blastp_kegg lcl|vvi:100260157 2 540 + 539 Gaps:13 99.44 535 56.58 0.0 uncharacterized LOC100260157
blastp_kegg lcl|cmo:103486826 1 540 + 540 Gaps:15 100.00 525 58.67 0.0 transcription factor IIIB 50 kDa subunit
blastp_kegg lcl|csv:101223951 1 540 + 540 Gaps:15 100.00 525 58.29 0.0 uncharacterized LOC101223951
blastp_uniprot_sprot sp|Q9SS44|TF2B2_ARATH 5 281 + 277 Gaps:49 97.44 312 24.01 5e-10 Transcription initiation factor IIB-2 OS Arabidopsis thaliana GN TFIIB2 PE 2 SV 1
blastp_uniprot_sprot sp|P29056|TF3B_YEAST 5 259 + 255 Gaps:34 43.46 596 24.32 1e-09 Transcription factor IIIB 70 kDa subunit OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN BRF1 PE 1 SV 1
blastp_uniprot_sprot sp|P46070|TF3B_KLULA 5 259 + 255 Gaps:33 47.12 556 25.57 2e-09 Transcription factor IIIB 70 kDa subunit OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN TDS4 PE 3 SV 2
blastp_uniprot_sprot sp|P48513|TF2B_SOYBN 5 281 + 277 Gaps:54 97.44 313 23.28 5e-09 Transcription initiation factor IIB OS Glycine max GN TFIIB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5JGN1|TF2B1_THEKO 1 263 + 263 Gaps:54 97.67 300 25.94 7e-08 Transcription initiation factor IIB 1 OS Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN tfb1 PE 3 SV 1
blastp_uniprot_sprot sp|P48512|TF2B1_ARATH 5 281 + 277 Gaps:49 97.44 312 22.04 1e-07 Transcription initiation factor IIB-1 OS Arabidopsis thaliana GN TFIIB1 PE 1 SV 1
blastp_uniprot_sprot sp|P61999|TF2B_PYRWO 5 263 + 259 Gaps:52 95.67 300 24.39 2e-06 Transcription initiation factor IIB OS Pyrococcus woesei GN tfb PE 1 SV 1
blastp_uniprot_sprot sp|P61998|TF2B_PYRFU 5 263 + 259 Gaps:52 95.67 300 24.39 2e-06 Transcription initiation factor IIB OS Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN tfb PE 1 SV 1
blastp_uniprot_sprot sp|Q8W0W3|TF2B_ORYSJ 5 281 + 277 Gaps:53 97.44 312 22.37 4e-06 Transcription initiation factor IIB OS Oryza sativa subsp. japonica GN TFIIB PE 1 SV 1
blastp_uniprot_sprot sp|Q9P6R0|TF3B_SCHPO 5 232 + 228 Gaps:30 47.56 492 21.37 4e-06 Transcription factor IIIB 60 kDa subunit OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN brf1 PE 1 SV 2
rpsblast_cdd gnl|CDD|31595 5 263 + 259 Gaps:41 96.84 285 22.10 5e-18 COG1405 SUA7 Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB [Transcription].
rpsblast_kog gnl|CDD|36811 5 543 + 539 Gaps:37 97.50 521 22.05 1e-56 KOG1598 KOG1598 KOG1598 Transcription initiation factor TFIIIB Brf1 subunit [Transcription].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 4 35 32 SSF57783 none none none
Gene3D 71 159 89 G3DSA:1.10.472.10 none none IPR013763
PRINTS 247 261 15 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 142 157 16 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 17 37 21 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 215 231 17 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PANTHER 5 543 539 PTHR11618:SF23 none none none
Gene3D 4 32 29 G3DSA:2.20.25.10 none none none
Gene3D 189 263 75 G3DSA:1.10.472.10 none none IPR013763
SUPERFAMILY 196 265 70 SSF47954 none none IPR013763
PANTHER 5 543 539 PTHR11618 "Reactome:REACT_1788";signature_desc=TRANSCRIPTION INITIATION FACTOR IIB-RELATED none IPR000812
SUPERFAMILY 71 160 90 SSF47954 none none IPR013763

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting