Protein : Qrob_P0559160.2 Q. robur
Protein Identifier  ? Qrob_P0559160.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14567 - U3 small nucleolar RNA-associated protein 14 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 918  
Kegg Orthology  K14567
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0032040 small-subunit processome A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267476 1 900 + 900 Gaps:26 98.77 895 68.33 0.0 uncharacterized LOC100267476
blastp_kegg lcl|tcc:TCM_004670 1 908 + 908 Gaps:49 99.89 904 68.99 0.0 U3 small nucleolar RNA-associated protein putative
blastp_kegg lcl|cit:102624815 1 898 + 898 Gaps:20 98.46 910 67.97 0.0 uncharacterized LOC102624815
blastp_kegg lcl|cic:CICLE_v10027776mg 1 898 + 898 Gaps:20 98.46 910 67.63 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333974 1 887 + 887 Gaps:43 97.12 902 66.89 0.0 uncharacterized protein C57A7.06
blastp_kegg lcl|pop:POPTR_0002s20500g 1 897 + 897 Gaps:35 98.78 899 63.40 0.0 POPTRDRAFT_644765 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1178390 1 887 + 887 Gaps:37 97.11 900 64.87 0.0 U3 small nucleolar RNA-associated protein putative
blastp_kegg lcl|pop:POPTR_0014s12300g 1 891 + 891 Gaps:46 98.45 901 63.25 0.0 POPTRDRAFT_664422 hypothetical protein
blastp_kegg lcl|gmx:100784007 1 909 + 909 Gaps:46 99.32 887 63.00 0.0 uncharacterized LOC100784007
blastp_kegg lcl|pxb:103928416 41 900 + 860 Gaps:34 94.16 907 66.86 0.0 uncharacterized protein C57A7.06-like
blastp_uniprot_sprot sp|P87137|YDM6_SCHPO 233 869 + 637 Gaps:60 64.91 929 33.33 2e-57 Uncharacterized protein C57A7.06 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC57A7.06 PE 1 SV 1
blastp_uniprot_sprot sp|Q04500|UTP14_YEAST 182 869 + 688 Gaps:92 75.42 899 28.91 1e-51 U3 small nucleolar RNA-associated protein 14 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UTP14 PE 1 SV 1
blastp_uniprot_sprot sp|Q3T0Q8|UT14A_BOVIN 139 874 + 736 Gaps:47 59.61 770 33.77 1e-23 U3 small nucleolar RNA-associated protein 14 homolog A OS Bos taurus GN UTP14A PE 2 SV 1
blastp_uniprot_sprot sp|Q5TAP6|UT14C_HUMAN 139 874 + 736 Gaps:47 59.66 766 33.92 2e-21 U3 small nucleolar RNA-associated protein 14 homolog C OS Homo sapiens GN UTP14C PE 1 SV 1
blastp_uniprot_sprot sp|Q640M1|UT14A_MOUSE 721 875 + 155 Gaps:17 19.30 767 41.89 1e-20 U3 small nucleolar RNA-associated protein 14 homolog A OS Mus musculus GN Utp14a PE 2 SV 1
blastp_uniprot_sprot sp|Q9BVJ6|UT14A_HUMAN 723 874 + 152 Gaps:19 18.81 771 43.45 1e-19 U3 small nucleolar RNA-associated protein 14 homolog A OS Homo sapiens GN UTP14A PE 1 SV 1
blastp_uniprot_sprot sp|Q6EJB6|UT14B_MOUSE 723 874 + 152 Gaps:17 19.18 756 41.38 2e-17 U3 small nucleolar RNA-associated protein 14 homolog B OS Mus musculus GN Utp14b PE 2 SV 2
rpsblast_cdd gnl|CDD|203057 140 873 + 734 Gaps:47 99.59 728 35.86 1e-138 pfam04615 Utp14 Utp14 protein. This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome.
rpsblast_cdd gnl|CDD|35203 60 869 + 810 Gaps:83 88.72 869 26.72 7e-50 COG5644 COG5644 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|37383 24 873 + 850 Gaps:70 88.23 654 46.27 4e-54 KOG2172 KOG2172 KOG2172 Uncharacterized conserved protein [Function unknown].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 21 99 79 PTHR14150:SF12 none none none
Coils 516 544 29 Coil none none none
Pfam 121 872 752 PF04615 none Utp14 protein IPR006709
Coils 779 803 25 Coil none none none
PANTHER 119 906 788 PTHR14150 none none IPR006709
PANTHER 119 906 788 PTHR14150:SF12 none none none
PANTHER 21 99 79 PTHR14150 none none IPR006709

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting