Protein : Qrob_P0559130.2 Q. robur
Protein Identifier  ? Qrob_P0559130.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 4.1.99.13 - (6-4)DNA photolyase. Code Enzyme  EC:4.1.99.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 456  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0003913 DNA photolyase activity Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103333971 1 455 + 455 Gaps:10 100.00 459 82.35 0.0 blue-light photoreceptor PHR2
blastp_kegg lcl|pper:PRUPE_ppa005477mg 1 455 + 455 Gaps:10 100.00 459 82.35 0.0 hypothetical protein
blastp_kegg lcl|cit:102607951 1 455 + 455 Gaps:13 100.00 462 77.92 0.0 blue-light photoreceptor PHR2-like
blastp_kegg lcl|mdm:103423126 1 455 + 455 Gaps:13 100.00 460 78.26 0.0 blue-light photoreceptor PHR2-like
blastp_kegg lcl|pxb:103928419 1 455 + 455 Gaps:12 100.00 459 78.00 0.0 blue-light photoreceptor PHR2
blastp_kegg lcl|pxb:103928382 1 455 + 455 Gaps:12 100.00 459 77.56 0.0 blue-light photoreceptor PHR2-like
blastp_kegg lcl|tcc:TCM_004667 1 455 + 455 Gaps:17 100.00 466 77.90 0.0 Photolyase/blue-light receptor 2 isoform 1
blastp_kegg lcl|fve:101309988 3 455 + 453 Gaps:16 99.35 460 76.81 0.0 blue-light photoreceptor PHR2-like
blastp_kegg lcl|mdm:103432598 1 455 + 455 Gaps:20 100.00 459 75.16 0.0 blue-light photoreceptor PHR2
blastp_kegg lcl|rcu:RCOM_1178360 23 455 + 433 Gaps:7 94.76 458 79.26 0.0 DNA photolyase putative (EC:4.1.99.3)
blastp_pdb 1np7_B 124 438 + 315 Gaps:36 61.15 489 40.13 3e-65 mol:protein length:489 DNA photolyase
blastp_pdb 1np7_A 124 438 + 315 Gaps:36 61.15 489 40.13 3e-65 mol:protein length:489 DNA photolyase
blastp_pdb 2vtb_B 118 435 + 318 Gaps:27 57.33 525 39.87 5e-63 mol:protein length:525 CRYPTOCHROME DASH
blastp_pdb 2j4d_B 118 435 + 318 Gaps:27 57.33 525 39.87 5e-63 mol:protein length:525 CRYPTOCHROME DASH
blastp_pdb 2j4d_A 118 435 + 318 Gaps:27 57.33 525 39.87 5e-63 mol:protein length:525 CRYPTOCHROME DASH
blastp_pdb 2vtb_F 118 435 + 318 Gaps:27 57.22 526 39.87 6e-63 mol:protein length:526 CRYPTOCHROME DASH
blastp_pdb 2vtb_E 118 435 + 318 Gaps:27 57.22 526 39.87 6e-63 mol:protein length:526 CRYPTOCHROME DASH
blastp_pdb 2vtb_D 118 435 + 318 Gaps:27 57.22 526 39.87 6e-63 mol:protein length:526 CRYPTOCHROME DASH
blastp_pdb 2vtb_C 118 435 + 318 Gaps:27 57.22 526 39.87 6e-63 mol:protein length:526 CRYPTOCHROME DASH
blastp_pdb 2vtb_A 118 435 + 318 Gaps:27 57.22 526 39.87 6e-63 mol:protein length:526 CRYPTOCHROME DASH
blastp_uniprot_sprot sp|Q8LB72|PHR2_ARATH 4 455 + 452 Gaps:15 99.11 447 72.69 0.0 Blue-light photoreceptor PHR2 OS Arabidopsis thaliana GN PHR2 PE 2 SV 2
blastp_uniprot_sprot sp|Q7NMD1|CRYD_GLOVI 123 436 + 314 Gaps:18 59.60 500 42.95 1e-70 Cryptochrome DASH OS Gloeobacter violaceus (strain PCC 7421) GN cry PE 3 SV 1
blastp_uniprot_sprot sp|Q75WS4|CRYD_XENLA 123 436 + 314 Gaps:26 57.74 523 43.05 2e-67 Cryptochrome DASH OS Xenopus laevis GN cry-dash PE 2 SV 1
blastp_uniprot_sprot sp|Q4KML2|CRYD_DANRE 123 438 + 316 Gaps:24 58.46 520 42.43 5e-67 Cryptochrome DASH OS Danio rerio GN cry-dash PE 2 SV 2
blastp_uniprot_sprot sp|P77967|CRYD_SYNY3 124 438 + 315 Gaps:36 61.15 489 40.13 1e-64 Cryptochrome DASH OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN cry PE 1 SV 2
blastp_uniprot_sprot sp|Q651U1|CRYD_ORYSJ 116 439 + 324 Gaps:41 55.84 582 40.92 1e-62 Cryptochrome DASH chloroplastic/mitochondrial OS Oryza sativa subsp. japonica GN CRYD PE 2 SV 1
blastp_uniprot_sprot sp|Q84KJ5|CRYD_ARATH 118 435 + 318 Gaps:27 52.90 569 39.87 4e-62 Cryptochrome DASH chloroplastic/mitochondrial OS Arabidopsis thaliana GN CRYD PE 1 SV 2
blastp_uniprot_sprot sp|Q38JU2|CRYD_SOLLC 124 446 + 323 Gaps:38 55.98 577 39.01 1e-61 Cryptochrome DASH chloroplastic/mitochondrial OS Solanum lycopersicum GN CRYD PE 3 SV 2
blastp_uniprot_sprot sp|Q7UJB1|CRYD_RHOBA 125 438 + 314 Gaps:21 61.27 488 37.12 3e-58 Cryptochrome DASH OS Rhodopirellula baltica (strain SH1) GN cry PE 3 SV 2
blastp_uniprot_sprot sp|Q3IPX9|CRYD_NATPD 125 438 + 314 Gaps:18 62.87 474 37.58 4e-56 Cryptochrome DASH OS Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) GN cry PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 331 442 112 SSF48173 none none IPR005101
PANTHER 30 436 407 PTHR11455:SF2 none none none
Pfam 125 283 159 PF00875 none DNA photolyase IPR006050
SUPERFAMILY 124 298 175 SSF52425 none none IPR006050
Gene3D 255 438 184 G3DSA:1.25.40.80 none none none
PANTHER 30 436 407 PTHR11455 none none none
Pfam 333 440 108 PF03441 none FAD binding domain of DNA photolyase IPR005101
Gene3D 124 253 130 G3DSA:3.40.50.620 none none IPR014729
ProSiteProfiles 123 257 135 PS51645 none Photolyase/cryptochrome alpha/beta domain profile. IPR006050

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting