Protein : Qrob_P0558200.2 Q. robur
Protein Identifier  ? Qrob_P0558200.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=1) KOG4455 - Uncharacterized conserved protein [Function unknown]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 98  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0072546 ER membrane protein complex A transmembrane protein complex that is involved in protein folding in the endoplasmic reticulum. In S. cerevisiae, it has six members: EMC1, EMC2, AIM27, EMC4, KRE27, and EMC6.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103323216 4 97 + 94 none 78.33 120 79.79 2e-49 ER membrane protein complex subunit 6
blastp_kegg lcl|pper:PRUPE_ppa013479mg 4 97 + 94 none 78.33 120 79.79 2e-49 hypothetical protein
blastp_kegg lcl|vvi:100251751 2 97 + 96 none 80.00 120 80.21 2e-49 transmembrane protein 93-like
blastp_kegg lcl|sly:101268716 1 97 + 97 none 80.83 120 76.29 5e-48 ER membrane protein complex subunit 6-like
blastp_kegg lcl|pop:POPTR_0008s10180g 1 97 + 97 none 82.91 117 74.23 2e-47 POPTRDRAFT_720815 hypothetical protein
blastp_kegg lcl|cit:102608374 2 97 + 96 none 59.26 162 78.12 3e-47 ER membrane protein complex subunit 6-like
blastp_kegg lcl|pxb:103961276 3 97 + 95 none 77.87 122 76.84 4e-47 ER membrane protein complex subunit 6
blastp_kegg lcl|mdm:103452660 3 97 + 95 none 83.33 114 76.84 6e-47 ER membrane protein complex subunit 6-like
blastp_kegg lcl|sot:102604244 1 97 + 97 none 94.17 103 73.20 6e-47 ER membrane protein complex subunit 6-like
blastp_kegg lcl|pop:POPTR_0010s15850g 1 97 + 97 none 82.91 117 75.26 1e-46 POPTRDRAFT_822225 hypothetical protein
blastp_uniprot_sprot sp|Q1ZXH4|EMC6_DICDI 7 95 + 89 none 72.36 123 37.08 9e-15 ER membrane protein complex subunit 6 OS Dictyostelium discoideum GN emc6 PE 3 SV 1
blastp_uniprot_sprot sp|Q9CQW0|EMC6_MOUSE 2 95 + 94 none 85.45 110 38.30 8e-12 ER membrane protein complex subunit 6 OS Mus musculus GN Emc6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BV81|EMC6_HUMAN 2 95 + 94 none 85.45 110 38.30 8e-12 ER membrane protein complex subunit 6 OS Homo sapiens GN EMC6 PE 1 SV 1
blastp_uniprot_sprot sp|Q68EU8|EMC6_XENLA 5 95 + 91 Gaps:1 83.64 110 41.30 1e-11 ER membrane protein complex subunit 6 OS Xenopus laevis GN emc6 PE 3 SV 1
blastp_uniprot_sprot sp|Q6GLC5|EMC6_XENTR 5 95 + 91 Gaps:1 83.64 110 40.22 2e-11 ER membrane protein complex subunit 6 OS Xenopus tropicalis GN emc6 PE 3 SV 1
blastp_uniprot_sprot sp|Q3ZCG8|EMC6_BOVIN 2 95 + 94 none 85.45 110 36.17 9e-11 ER membrane protein complex subunit 6 OS Bos taurus GN EMC6 PE 3 SV 1
blastp_uniprot_sprot sp|Q6P0F0|EMC6_DANRE 5 95 + 91 Gaps:1 83.64 110 39.13 6e-10 ER membrane protein complex subunit 6 OS Danio rerio GN emc6 PE 3 SV 1
rpsblast_cdd gnl|CDD|148567 17 94 + 78 none 96.30 81 43.59 6e-15 pfam07019 Rab5ip Rab5-interacting protein (Rab5ip). This family consists of several Rab5-interacting protein (RIP5 or Rab5ip) sequences. The ras-related GTPase rab5 is rate-limiting for homotypic early endosome fusion. Rab5ip represents a novel rab5 interacting protein that may function on endocytic vesicles as a receptor for rab5-GDP and participate in the activation of rab5.
rpsblast_kog gnl|CDD|39656 1 95 + 95 none 86.36 110 41.05 4e-20 KOG4455 KOG4455 KOG4455 Uncharacterized conserved protein [Function unknown].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 4 94 91 PTHR20994 none none IPR008504
Phobius 96 97 2 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 18 95 78 PF07019 none Rab5-interacting protein (Rab5ip) IPR029008
Phobius 20 39 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 40 44 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 66 76 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 19 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 77 95 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 45 65 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 4 94 91 PTHR20994:SF0 none none none

3 Localization

Analysis Start End Length
TMHMM 74 96 22
TMHMM 45 67 22
TMHMM 19 41 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting