Protein : Qrob_P0557600.2 Q. robur
Protein Identifier  ? Qrob_P0557600.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=2) 2.1.1.34 - tRNA (guanosine(18)-2'-O)-methyltransferase. Code Enzyme  EC:2.1.1.34
Gene Prediction Quality  validated Protein length 

Sequence

Length: 345  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0008173 RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103431455 1 343 + 343 Gaps:42 65.05 475 79.29 4e-164 tRNA (guanosine(18)-2'-O)-methyltransferase-like
blastp_kegg lcl|pper:PRUPE_ppa026189mg 1 344 + 344 Gaps:42 64.32 482 76.77 4e-159 hypothetical protein
blastp_kegg lcl|cit:102625348 1 342 + 342 Gaps:42 16.73 1841 77.60 2e-150 uncharacterized LOC102625348
blastp_kegg lcl|cic:CICLE_v10024446mg 1 342 + 342 Gaps:42 16.51 1866 76.95 9e-149 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s15110g 1 344 + 344 Gaps:41 17.21 1761 79.21 2e-147 hypothetical protein
blastp_kegg lcl|pmum:103342980 1 344 + 344 Gaps:42 16.52 1876 76.77 2e-146 uncharacterized LOC103342980
blastp_kegg lcl|gmx:102661981 1 344 + 344 Gaps:48 75.37 406 74.84 8e-145 uncharacterized LOC102661981
blastp_kegg lcl|cmo:103490840 1 344 + 344 Gaps:42 16.84 1841 74.84 2e-143 uncharacterized LOC103490840
blastp_kegg lcl|csv:101213211 1 342 + 342 Gaps:43 16.75 1833 75.24 3e-141 uncharacterized LOC101213211
blastp_kegg lcl|rcu:RCOM_0702910 1 344 + 344 Gaps:43 17.26 1744 76.74 7e-140 RNA binding protein putative
blastp_pdb 2ha8_B 172 341 + 170 Gaps:3 90.76 184 54.49 6e-58 mol:protein length:184 TAR (HIV-1) RNA loop binding protein
blastp_pdb 2ha8_A 172 341 + 170 Gaps:3 90.76 184 54.49 6e-58 mol:protein length:184 TAR (HIV-1) RNA loop binding protein
blastp_pdb 1zjr_A 184 341 + 158 Gaps:2 73.93 211 32.69 3e-13 mol:protein length:211 tRNA (Guanosine-2'-O-)-methyltransferase
blastp_pdb 1v2x_A 205 341 + 137 Gaps:13 69.07 194 29.10 3e-08 mol:protein length:194 tRNA (Gm18) methyltransferase
blastp_uniprot_sprot sp|Q13395|TARB1_HUMAN 160 341 + 182 Gaps:6 10.86 1621 53.98 1e-52 Probable methyltransferase TARBP1 OS Homo sapiens GN TARBP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q07527|TRM3_YEAST 176 341 + 166 Gaps:11 12.33 1436 37.29 4e-33 tRNA (guanosine(18)-2'-O)-methyltransferase OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TRM3 PE 1 SV 1
blastp_uniprot_sprot sp|O67577|TRMH_AQUAE 184 341 + 158 Gaps:2 73.93 211 32.69 1e-12 tRNA (guanosine(18)-2'-O)-methyltransferase OS Aquifex aeolicus (strain VF5) GN trmH PE 1 SV 1
blastp_uniprot_sprot sp|P0AGJ5|YFIF_ECOLI 187 343 + 157 Gaps:5 44.64 345 28.57 2e-08 Uncharacterized tRNA/rRNA methyltransferase YfiF OS Escherichia coli (strain K12) GN yfiF PE 3 SV 1
blastp_uniprot_sprot sp|P0AGJ6|YFIF_ECO57 187 343 + 157 Gaps:5 44.64 345 28.57 2e-08 Uncharacterized tRNA/rRNA methyltransferase YfiF OS Escherichia coli O157:H7 GN yfiF PE 3 SV 1
blastp_uniprot_sprot sp|P0AGJ4|TRMH_SHIFL 263 343 + 81 none 35.37 229 33.33 1e-06 tRNA (guanosine(18)-2'-O)-methyltransferase OS Shigella flexneri GN trmH PE 3 SV 1
blastp_uniprot_sprot sp|P0AGJ2|TRMH_ECOLI 263 343 + 81 none 35.37 229 33.33 1e-06 tRNA (guanosine(18)-2'-O)-methyltransferase OS Escherichia coli (strain K12) GN trmH PE 1 SV 1
blastp_uniprot_sprot sp|P0AGJ3|TRMH_ECO57 263 343 + 81 none 35.37 229 33.33 1e-06 tRNA (guanosine(18)-2'-O)-methyltransferase OS Escherichia coli O157:H7 GN trmH PE 3 SV 1
blastp_uniprot_sprot sp|B1MGY6|Y572_MYCA9 183 342 + 160 Gaps:25 50.48 315 30.19 1e-06 Uncharacterized tRNA/rRNA methyltransferase MAB_0572 OS Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN MAB_0572 PE 3 SV 1
blastp_uniprot_sprot sp|P74328|Y955_SYNY3 187 341 + 155 Gaps:13 40.62 384 33.33 3e-06 Uncharacterized tRNA/rRNA methyltransferase slr0955 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN slr0955 PE 3 SV 1
rpsblast_cdd gnl|CDD|201328 193 335 + 143 Gaps:12 99.30 142 31.91 2e-23 pfam00588 SpoU_methylase SpoU rRNA Methylase family. This family of proteins probably use S-AdoMet.
rpsblast_cdd gnl|CDD|30912 184 344 + 161 Gaps:21 61.54 260 31.87 3e-21 COG0566 SpoU rRNA methylases [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|182790 205 342 + 138 Gaps:11 39.02 346 33.33 2e-11 PRK10864 PRK10864 putative methyltransferase Provisional.
rpsblast_cdd gnl|CDD|30568 204 341 + 138 Gaps:6 87.74 155 29.41 2e-08 COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|129290 184 340 + 157 Gaps:10 65.40 237 32.26 3e-08 TIGR00186 rRNA_methyl_3 rRNA methylase putative group 3. this is part of the trmH (spoU) family of rRNA methylases.
rpsblast_cdd gnl|CDD|211559 204 343 + 140 Gaps:7 89.54 153 28.47 1e-07 TIGR00185 tRNA_yibK_trmL tRNA (cytidine(34)-2'-O)-methyltransferase. TrmL (previously YibK) is responsible for 2'-O-methylation at tRNA(Leu) position 34.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 189 342 154 PTHR12029 none none none
PANTHER 1 131 131 PTHR12029 none none none
SUPERFAMILY 186 342 157 SSF75217 none none IPR029028
PANTHER 189 342 154 PTHR12029:SF11 none none none
PANTHER 1 131 131 PTHR12029:SF11 none none none
Pfam 194 335 142 PF00588 none SpoU rRNA Methylase family IPR001537
Gene3D 183 342 160 G3DSA:3.40.1280.10 none none IPR029026

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting