Protein : Qrob_P0555400.2 Q. robur
Protein Identifier  ? Qrob_P0555400.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 5.1.3.1 - Ribulose-phosphate 3-epimerase. Code Enzyme  EC:5.1.3.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 278  
Kegg Orthology  K01783
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103931218 1 277 + 277 Gaps:7 100.00 284 89.44 0.0 ribulose-phosphate 3-epimerase chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa009655mg 1 277 + 277 Gaps:6 100.00 283 89.05 4e-180 hypothetical protein
blastp_kegg lcl|pmum:103338481 1 277 + 277 Gaps:6 100.00 283 89.40 4e-180 ribulose-phosphate 3-epimerase chloroplastic
blastp_kegg lcl|mdm:103455372 1 277 + 277 Gaps:7 100.00 284 89.08 9e-180 ribulose-phosphate 3-epimerase chloroplastic
blastp_kegg lcl|pxb:103931387 1 277 + 277 Gaps:7 100.00 284 88.38 3e-179 ribulose-phosphate 3-epimerase chloroplastic
blastp_kegg lcl|tcc:TCM_014095 1 277 + 277 Gaps:8 100.00 281 88.97 4e-179 D-ribulose-5-phosphate-3-epimerase isoform 1
blastp_kegg lcl|mdm:103437847 1 277 + 277 Gaps:7 100.00 284 88.38 1e-178 ribulose-phosphate 3-epimerase chloroplastic-like
blastp_kegg lcl|cit:102609480 1 277 + 277 Gaps:6 100.00 281 88.61 3e-177 ribulose-phosphate 3-epimerase chloroplastic-like
blastp_kegg lcl|vvi:100267206 1 277 + 277 Gaps:7 100.00 282 88.65 4e-177 ribulose-phosphate 3-epimerase chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10021564mg 1 277 + 277 Gaps:6 100.00 281 88.26 6e-176 hypothetical protein
blastp_pdb 1rpx_C 49 272 + 224 Gaps:5 99.57 230 91.27 8e-153 mol:protein length:230 PROTEIN (RIBULOSE-PHOSPHATE 3-EPIMERASE)
blastp_pdb 1rpx_B 49 272 + 224 Gaps:5 99.57 230 91.27 8e-153 mol:protein length:230 PROTEIN (RIBULOSE-PHOSPHATE 3-EPIMERASE)
blastp_pdb 1rpx_A 49 272 + 224 Gaps:5 99.57 230 91.27 8e-153 mol:protein length:230 PROTEIN (RIBULOSE-PHOSPHATE 3-EPIMERASE)
blastp_pdb 1tqj_F 58 272 + 215 Gaps:5 95.65 230 67.27 5e-105 mol:protein length:230 Ribulose-phosphate 3-epimerase
blastp_pdb 1tqj_E 58 272 + 215 Gaps:5 95.65 230 67.27 5e-105 mol:protein length:230 Ribulose-phosphate 3-epimerase
blastp_pdb 1tqj_D 58 272 + 215 Gaps:5 95.65 230 67.27 5e-105 mol:protein length:230 Ribulose-phosphate 3-epimerase
blastp_pdb 1tqj_C 58 272 + 215 Gaps:5 95.65 230 67.27 5e-105 mol:protein length:230 Ribulose-phosphate 3-epimerase
blastp_pdb 1tqj_B 58 272 + 215 Gaps:5 95.65 230 67.27 5e-105 mol:protein length:230 Ribulose-phosphate 3-epimerase
blastp_pdb 1tqj_A 58 272 + 215 Gaps:5 95.65 230 67.27 5e-105 mol:protein length:230 Ribulose-phosphate 3-epimerase
blastp_pdb 2fli_L 57 269 + 213 Gaps:7 98.18 220 46.76 2e-62 mol:protein length:220 ribulose-phosphate 3-epimerase
blastp_uniprot_sprot sp|Q43843|RPE_SOLTU 5 277 + 273 Gaps:7 100.00 280 87.50 8e-176 Ribulose-phosphate 3-epimerase chloroplastic (Fragment) OS Solanum tuberosum PE 1 SV 1
blastp_uniprot_sprot sp|Q43157|RPE_SPIOL 1 277 + 277 Gaps:8 100.00 285 86.67 2e-175 Ribulose-phosphate 3-epimerase chloroplastic OS Spinacia oleracea GN RPE PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZTP5|RPE_ORYSJ 34 275 + 242 Gaps:5 90.15 274 88.66 6e-157 Ribulose-phosphate 3-epimerase chloroplastic OS Oryza sativa subsp. japonica GN RPE PE 1 SV 2
blastp_uniprot_sprot sp|P74061|RPE_SYNY3 58 272 + 215 Gaps:5 95.65 230 67.27 2e-104 Ribulose-phosphate 3-epimerase OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN rpe PE 1 SV 3
blastp_uniprot_sprot sp|O34557|RPE_BACSU 59 270 + 212 Gaps:8 99.54 217 61.57 3e-82 Ribulose-phosphate 3-epimerase OS Bacillus subtilis (strain 168) GN rpe PE 3 SV 1
blastp_uniprot_sprot sp|Q04539|RPEP_CUPNH 55 266 + 212 Gaps:11 90.87 241 48.40 1e-62 Ribulose-phosphate 3-epimerase plasmid OS Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN cbbEP PE 3 SV 1
blastp_uniprot_sprot sp|P45455|RPE_SERMA 59 259 + 201 Gaps:8 97.62 210 49.27 4e-62 Ribulose-phosphate 3-epimerase OS Serratia marcescens GN rpe PE 3 SV 1
blastp_uniprot_sprot sp|P44756|RPE_HAEIN 60 267 + 208 Gaps:8 94.64 224 48.11 1e-61 Ribulose-phosphate 3-epimerase OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN rpe PE 3 SV 1
blastp_uniprot_sprot sp|P0AG10|RPE_SHIFL 60 269 + 210 Gaps:8 95.11 225 47.20 2e-61 Ribulose-phosphate 3-epimerase OS Shigella flexneri GN rpe PE 3 SV 1
blastp_uniprot_sprot sp|P0AG07|RPE_ECOLI 60 269 + 210 Gaps:8 95.11 225 47.20 2e-61 Ribulose-phosphate 3-epimerase OS Escherichia coli (strain K12) GN rpe PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 55 267 213 G3DSA:3.20.20.70 none none IPR013785
SUPERFAMILY 59 268 210 SSF51366 none none IPR011060
TIGRFAM 61 267 207 TIGR01163 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" rpe: ribulose-phosphate 3-epimerase IPR000056
PANTHER 53 269 217 PTHR11749 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723";signature_desc=RIBULOSE-5-PHOSPHATE-3-EPIMERASE none IPR000056
ProSitePatterns 187 209 23 PS01086 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" Ribulose-phosphate 3-epimerase family signature 2. IPR000056
ProSitePatterns 83 97 15 PS01085 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" Ribulose-phosphate 3-epimerase family signature 1. IPR000056
PANTHER 53 269 217 PTHR11749:SF4 none none none
Pfam 61 256 196 PF00834 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" Ribulose-phosphate 3 epimerase family IPR000056

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting