Protein : Qrob_P0554130.2 Q. robur
Protein Identifier  ? Qrob_P0554130.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PF01789 - PsbP Gene Prediction Quality  validated
Protein length 

Sequence

Length: 264  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0009654 photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
GO:0019898 extrinsic component of membrane The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103952918 1 261 + 261 Gaps:21 96.95 262 66.14 1e-110 psbP domain-containing protein 3 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa010606mg 1 261 + 261 Gaps:28 96.71 243 71.06 1e-109 hypothetical protein
blastp_kegg lcl|tcc:TCM_034821 1 262 + 262 Gaps:26 97.42 271 63.64 1e-109 Photosystem II reaction center PsbP family protein isoform 1
blastp_kegg lcl|pmum:103336629 1 261 + 261 Gaps:28 96.71 243 70.21 2e-108 psbP domain-containing protein 3 chloroplastic
blastp_kegg lcl|vvi:100263326 48 262 + 215 Gaps:3 84.58 253 69.63 1e-107 psbP domain-containing protein 3 chloroplastic-like
blastp_kegg lcl|cit:102607932 1 262 + 262 Gaps:29 93.56 264 66.80 2e-104 psbP domain-containing protein 3 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0005s27800g 1 262 + 262 Gaps:32 97.47 277 58.89 6e-103 POPTRDRAFT_206841 hypothetical protein
blastp_kegg lcl|fve:101302662 1 261 + 261 Gaps:26 96.81 251 67.49 6e-102 psbP domain-containing protein 3 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1602050 19 262 + 244 Gaps:23 93.56 264 63.16 6e-101 hypothetical protein
blastp_kegg lcl|ath:AT1G76450 52 262 + 211 Gaps:5 83.40 247 68.93 5e-99 photosystem II reaction center PsbP family protein
blastp_uniprot_sprot sp|Q9S720|PPD3_ARATH 52 262 + 211 Gaps:5 83.40 247 68.93 2e-100 PsbP domain-containing protein 3 chloroplastic OS Arabidopsis thaliana GN PPD3 PE 1 SV 2

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 110 262 153 SSF55724 none none IPR016123
PANTHER 77 262 186 PTHR31407 none none none
Pfam 92 262 171 PF01789 none PsbP IPR002683
PANTHER 77 262 186 PTHR31407:SF11 none none none
Gene3D 107 262 156 G3DSA:3.40.1000.10 none none IPR016123

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting