Protein : Qrob_P0541660.2 Q. robur
Protein Identifier  ? Qrob_P0541660.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=1) KOG0003//KOG0004//KOG0011 - Ubiquitin/60s ribosomal protein L40 fusion [Translation ribosomal structure and biogenesis]. // Ubiquitin/40S ribosomal protein S27a fusion [Translation ribosomal structure and biogenesis]. // Nucleotide excision repair factor NEF2 RAD23 component [Replication recombination and repair]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 374  
Kegg Orthology  K10839
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006289 nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO:0003684 damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244610 1 373 + 373 Gaps:14 100.00 381 79.53 0.0 putative DNA repair protein RAD23-3-like
blastp_kegg lcl|pmum:103329678 1 373 + 373 Gaps:22 100.00 385 79.48 0.0 ubiquitin receptor RAD23d
blastp_kegg lcl|rcu:RCOM_1725680 1 373 + 373 Gaps:24 100.00 381 77.43 0.0 uv excision repair protein rad23 putative
blastp_kegg lcl|sot:102604588 1 373 + 373 Gaps:17 100.00 390 77.95 0.0 ubiquitin receptor RAD23c-like
blastp_kegg lcl|sly:101258124 1 373 + 373 Gaps:34 100.00 383 78.07 0.0 putative DNA repair protein RAD23-3-like
blastp_kegg lcl|cit:102614644 1 373 + 373 Gaps:24 100.00 397 76.83 0.0 ubiquitin receptor RAD23c-like
blastp_kegg lcl|sot:102577665 1 373 + 373 Gaps:27 100.00 382 78.01 0.0 RAD23-like uncharacterized LOC102577665
blastp_kegg lcl|pop:POPTR_0005s15740g 1 373 + 373 Gaps:11 100.00 384 77.86 0.0 hypothetical protein
blastp_kegg lcl|sly:101246007 1 373 + 373 Gaps:16 100.00 389 76.61 0.0 rad23 putative DNA repair protein RAD23-3-like
blastp_kegg lcl|pop:POPTR_0004s10000g 1 373 + 373 Gaps:12 100.00 385 75.58 0.0 POPTRDRAFT_831129 ubiquitin family protein
blastp_pdb 1qze_A 3 373 + 371 Gaps:65 97.28 368 40.78 7e-67 mol:protein length:368 UV excision repair protein RAD23 homolog A
blastp_pdb 1oqy_A 3 373 + 371 Gaps:65 97.28 368 40.78 7e-67 mol:protein length:368 UV excision repair protein RAD23 homolog A
blastp_pdb 1uel_A 1 82 + 82 none 86.32 95 42.68 3e-16 mol:protein length:95 UV excision repair protein RAD23 homolog B
blastp_pdb 1p1a_A 1 82 + 82 none 96.47 85 42.68 9e-16 mol:protein length:85 UV excision repair protein RAD23 homolog B
blastp_pdb 2qsh_X 256 367 + 112 Gaps:25 80.12 171 32.12 2e-13 mol:protein length:171 UV excision repair protein RAD23
blastp_pdb 2qsg_X 256 367 + 112 Gaps:25 80.12 171 32.12 2e-13 mol:protein length:171 UV excision repair protein RAD23
blastp_pdb 2qsf_X 256 367 + 112 Gaps:25 80.12 171 32.12 2e-13 mol:protein length:171 UV excision repair protein RAD23
blastp_pdb 2wyq_A 3 78 + 76 none 89.41 85 38.16 7e-12 mol:protein length:85 UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A
blastp_pdb 1pve_A 249 306 + 58 none 80.56 72 46.55 8e-12 mol:protein length:72 UV excision repair protein RAD23 homolog B
blastp_pdb 2f4o_B 249 305 + 57 none 93.44 61 47.37 1e-11 mol:protein length:61 XP-C repair complementing complex 58 kDa prot
blastp_uniprot_sprot sp|Q84L31|RD23C_ARATH 1 373 + 373 Gaps:48 100.00 419 71.36 0.0 Ubiquitin receptor RAD23c OS Arabidopsis thaliana GN RAD23C PE 1 SV 2
blastp_uniprot_sprot sp|Q84L30|RD23D_ARATH 1 373 + 373 Gaps:12 99.74 378 75.33 0.0 Ubiquitin receptor RAD23d OS Arabidopsis thaliana GN RAD23D PE 1 SV 2
blastp_uniprot_sprot sp|Q40742|RAD23_ORYSJ 1 373 + 373 Gaps:21 98.98 392 63.14 5e-158 Probable ubiquitin receptor RAD23 OS Oryza sativa subsp. japonica GN RAD23 PE 1 SV 2
blastp_uniprot_sprot sp|Q84L33|RD23B_ARATH 1 373 + 373 Gaps:22 100.00 371 61.19 8e-146 Ubiquitin receptor RAD23b OS Arabidopsis thaliana GN RAD23B PE 1 SV 3
blastp_uniprot_sprot sp|Q84L32|RD23A_ARATH 1 373 + 373 Gaps:21 100.00 368 57.61 6e-138 Probable ubiquitin receptor RAD23a OS Arabidopsis thaliana GN RAD23A PE 1 SV 2
blastp_uniprot_sprot sp|P54728|RD23B_MOUSE 1 367 + 367 Gaps:96 98.80 416 37.47 3e-72 UV excision repair protein RAD23 homolog B OS Mus musculus GN Rad23b PE 1 SV 2
blastp_uniprot_sprot sp|P54727|RD23B_HUMAN 1 365 + 365 Gaps:71 98.29 409 38.06 5e-71 UV excision repair protein RAD23 homolog B OS Homo sapiens GN RAD23B PE 1 SV 1
blastp_uniprot_sprot sp|Q4KMA2|RD23B_RAT 1 365 + 365 Gaps:101 98.31 415 37.01 5e-71 UV excision repair protein RAD23 homolog B OS Rattus norvegicus GN Rad23b PE 1 SV 1
blastp_uniprot_sprot sp|P54725|RD23A_HUMAN 3 373 + 371 Gaps:65 98.62 363 40.78 2e-66 UV excision repair protein RAD23 homolog A OS Homo sapiens GN RAD23A PE 1 SV 1
blastp_uniprot_sprot sp|Q29RK4|RD23B_BOVIN 1 365 + 365 Gaps:82 98.28 408 36.66 1e-64 UV excision repair protein RAD23 homolog B OS Bos taurus GN RAD23B PE 2 SV 1

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 1 372 372 TIGR00601 none rad23: UV excision repair protein Rad23 IPR004806
SUPERFAMILY 310 371 62 SSF46934 none none IPR009060
ProSiteProfiles 146 189 44 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
ProSiteProfiles 326 367 42 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
SMART 247 290 44 SM00727 none Heat shock chaperonin-binding motif. IPR006636
SUPERFAMILY 1 91 91 SSF54236 none none IPR029071
Pfam 6 77 72 PF00240 none Ubiquitin family IPR000626
SMART 148 188 41 SM00165 none Ubiquitin associated domain IPR015940
SMART 329 366 38 SM00165 none Ubiquitin associated domain IPR015940
Gene3D 326 372 47 G3DSA:1.10.8.10 none none none
Pfam 330 364 35 PF00627 none UBA/TS-N domain IPR000449
Pfam 149 186 38 PF00627 none UBA/TS-N domain IPR000449
Gene3D 1 77 77 G3DSA:3.10.20.90 none none none
SMART 1 75 75 SM00213 none Ubiquitin homologues IPR000626
SUPERFAMILY 145 197 53 SSF46934 none none IPR009060
SUPERFAMILY 245 310 66 SSF101238 none none IPR015360
Gene3D 245 310 66 G3DSA:1.10.10.540 none none IPR015360
Pfam 249 306 58 PF09280 none XPC-binding domain IPR015360
PANTHER 2 373 372 PTHR10621 none none none
PANTHER 2 373 372 PTHR10621:SF5 none none none
Gene3D 141 192 52 G3DSA:1.10.8.10 none none none
ProSiteProfiles 1 76 76 PS50053 none Ubiquitin domain profile. IPR000626
PRINTS 275 297 23 PR01839 none DNA repair protein Rad23 signature IPR004806
PRINTS 340 354 15 PR01839 none DNA repair protein Rad23 signature IPR004806
PRINTS 323 339 17 PR01839 none DNA repair protein Rad23 signature IPR004806
PRINTS 355 370 16 PR01839 none DNA repair protein Rad23 signature IPR004806

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting