Protein : Qrob_P0541320.2 Q. robur
Protein Identifier  ? Qrob_P0541320.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) 5.1.3.6 - UDP-glucuronate 4-epimerase. Code Enzyme  EC:5.1.3.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 436  
Kegg Orthology  K08679
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0050662 coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103337260 1 435 + 435 Gaps:7 100.00 434 81.11 0.0 UDP-glucuronate 4-epimerase 5
blastp_kegg lcl|fve:101298705 1 435 + 435 Gaps:6 100.00 437 79.63 0.0 UDP-glucuronate 4-epimerase 3-like
blastp_kegg lcl|pper:PRUPE_ppa006148mg 23 435 + 413 Gaps:4 97.65 425 81.69 0.0 hypothetical protein
blastp_kegg lcl|cmo:103483360 9 430 + 422 Gaps:8 99.07 432 78.04 0.0 UDP-glucuronate 4-epimerase 3
blastp_kegg lcl|csv:101215329 1 430 + 430 Gaps:9 99.32 438 76.78 0.0 UDP-glucuronate 4-epimerase 3-like
blastp_kegg lcl|csv:101229888 9 430 + 422 Gaps:8 99.07 432 77.57 0.0 UDP-glucuronate 4-epimerase 3-like
blastp_kegg lcl|eus:EUTSA_v10001454mg 9 430 + 422 Gaps:10 98.85 435 76.28 0.0 hypothetical protein
blastp_kegg lcl|pmum:103331771 1 430 + 430 Gaps:12 99.31 435 76.85 0.0 UDP-glucuronate 4-epimerase 3
blastp_kegg lcl|pper:PRUPE_ppa005953mg 1 430 + 430 Gaps:12 99.31 435 76.85 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_005530 4 430 + 427 Gaps:9 99.31 437 75.58 0.0 UDP-D-glucuronate 4-epimerase 3
blastp_pdb 3ruf_B 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3rue_B 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3ruh_D 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3ruh_C 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3ruh_B 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3ruh_A 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3ruf_b 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3ruf_S 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3ruf_A 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_pdb 3rue_b 95 426 + 332 Gaps:36 92.31 351 33.02 9e-34 mol:protein length:351 WbgU
blastp_uniprot_sprot sp|O81312|GAE3_ARATH 6 433 + 428 Gaps:13 99.77 430 74.36 0.0 UDP-glucuronate 4-epimerase 3 OS Arabidopsis thaliana GN GAE3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LPC1|GAE2_ARATH 9 434 + 426 Gaps:9 99.31 434 74.01 0.0 UDP-glucuronate 4-epimerase 2 OS Arabidopsis thaliana GN GAE2 PE 2 SV 1
blastp_uniprot_sprot sp|O22141|GAE4_ARATH 9 430 + 422 Gaps:12 98.86 437 72.92 0.0 UDP-glucuronate 4-epimerase 4 OS Arabidopsis thaliana GN GAE4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9STI6|GAE5_ARATH 9 435 + 427 Gaps:10 99.77 436 73.56 0.0 UDP-glucuronate 4-epimerase 5 OS Arabidopsis thaliana GN GAE5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M0B6|GAE1_ARATH 10 430 + 421 Gaps:3 98.37 429 67.77 0.0 UDP-glucuronate 4-epimerase 1 OS Arabidopsis thaliana GN GAE1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LIS3|GAE6_ARATH 74 425 + 352 none 76.52 460 74.15 0.0 UDP-glucuronate 4-epimerase 6 OS Arabidopsis thaliana GN GAE6 PE 1 SV 1
blastp_uniprot_sprot sp|Q04871|YCL2_ECO11 94 426 + 333 Gaps:10 99.70 334 45.05 1e-90 Uncharacterized 37.6 kDa protein in cld 5'region OS Escherichia coli O111:H- PE 3 SV 1
blastp_uniprot_sprot sp|P39858|CAPI_STAAU 94 427 + 334 Gaps:10 100.00 334 43.71 6e-90 Protein CapI OS Staphylococcus aureus GN capI PE 3 SV 1
blastp_uniprot_sprot sp|Q58455|Y1055_METJA 95 423 + 329 Gaps:23 96.32 326 48.09 4e-87 Uncharacterized protein MJ1055 OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN MJ1055 PE 3 SV 1
blastp_uniprot_sprot sp|O54067|LPSL_RHIME 94 426 + 333 Gaps:12 98.24 341 41.79 7e-81 UDP-glucuronate 5'-epimerase OS Rhizobium meliloti (strain 1021) GN lspL PE 3 SV 2

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 60 435 376 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 40 40 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 96 336 241 PF01370 none NAD dependent epimerase/dehydratase family IPR001509
PANTHER 90 431 342 PTHR10366 none none none
PANTHER 90 431 342 PTHR10366:SF319 none none none
Gene3D 277 429 153 G3DSA:3.90.25.10 none none none
PRINTS 122 138 17 PR01713 none Nucleotide sugar epimerase signature IPR008089
PRINTS 347 362 16 PR01713 none Nucleotide sugar epimerase signature IPR008089
PRINTS 312 327 16 PR01713 none Nucleotide sugar epimerase signature IPR008089
PRINTS 387 404 18 PR01713 none Nucleotide sugar epimerase signature IPR008089
Gene3D 92 276 185 G3DSA:3.40.50.720 none none IPR016040
Phobius 41 59 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 91 427 337 SSF51735 none none none

2 Localization

Analysis Start End Length
TMHMM 41 58 17
TMHMM 93 112 19

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting