Protein : Qrob_P0536530.2 Q. robur
Protein Identifier  ? Qrob_P0536530.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K17428 - large subunit ribosomal protein L47 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 110  
Kegg Orthology  K17428
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0005761 mitochondrial ribosome A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100500208 1 109 + 109 Gaps:5 76.06 142 79.63 3e-52 uncharacterized LOC100500208
blastp_kegg lcl|pvu:PHAVU_009G188900g 1 109 + 109 Gaps:5 76.06 142 78.70 2e-50 hypothetical protein
blastp_kegg lcl|vvi:100248410 1 109 + 109 Gaps:3 75.71 140 79.25 7e-50 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|gmx:100812176 1 109 + 109 Gaps:6 76.22 143 80.73 1e-49 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|csv:101226177 1 109 + 109 Gaps:6 76.22 143 83.49 2e-49 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|csv:101210906 1 109 + 109 Gaps:6 76.22 143 83.49 2e-49 39S ribosomal protein L47 mitochondrial-like
blastp_kegg lcl|atr:s00045p00206320 1 109 + 109 Gaps:4 75.54 139 80.00 9e-49 AMTR_s00045p00206320 hypothetical protein
blastp_kegg lcl|cmo:103493926 1 109 + 109 Gaps:6 76.22 143 83.49 1e-48 39S ribosomal protein L47 mitochondrial
blastp_kegg lcl|pop:POPTR_0014s10670g 1 109 + 109 Gaps:5 76.06 142 76.85 4e-48 POPTRDRAFT_731548 ribosomal protein L29
blastp_kegg lcl|fve:101296382 1 109 + 109 Gaps:4 75.00 140 74.29 6e-48 39S ribosomal protein L47 mitochondrial-like
blastp_uniprot_sprot sp|Q08DT6|RM47_BOVIN 27 109 + 83 Gaps:4 31.35 252 49.37 3e-14 39S ribosomal protein L47 mitochondrial OS Bos taurus GN MRPL47 PE 2 SV 1
blastp_uniprot_sprot sp|Q8K2Y7|RM47_MOUSE 27 109 + 83 Gaps:4 31.35 252 49.37 4e-14 39S ribosomal protein L47 mitochondrial OS Mus musculus GN Mrpl47 PE 2 SV 2
blastp_uniprot_sprot sp|Q9HD33|RM47_HUMAN 27 109 + 83 Gaps:4 31.60 250 48.10 3e-13 39S ribosomal protein L47 mitochondrial OS Homo sapiens GN MRPL47 PE 1 SV 2
blastp_uniprot_sprot sp|Q2H080|RM04_CHAGB 34 100 + 67 Gaps:1 24.26 272 43.94 3e-09 54S ribosomal protein L4 mitochondrial OS Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN MRPL4 PE 3 SV 1
blastp_uniprot_sprot sp|Q6CF20|RM04_YARLI 32 97 + 66 Gaps:6 20.59 340 41.43 8e-08 54S ribosomal protein L4 mitochondrial OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN MRPL4 PE 3 SV 1
blastp_uniprot_sprot sp|P87232|RM04_SCHPO 32 101 + 70 Gaps:2 47.22 144 41.18 9e-08 54S ribosomal protein L4 mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN mrpl4 PE 3 SV 1
blastp_uniprot_sprot sp|Q7S910|RM04_NEUCR 34 88 + 55 Gaps:1 20.53 263 46.30 1e-07 54S ribosomal protein L4 mitochondrial OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN mrpl-4 PE 3 SV 2
blastp_uniprot_sprot sp|A6RDX3|RM04_AJECN 37 90 + 54 Gaps:1 21.37 248 45.28 1e-06 54S ribosomal protein L4 mitochondrial OS Ajellomyces capsulatus (strain NAm1 / WU24) GN MRPL4 PE 3 SV 1
blastp_uniprot_sprot sp|Q0CXX1|RM04_ASPTN 31 105 + 75 Gaps:9 38.32 214 37.80 1e-06 54S ribosomal protein L4 mitochondrial OS Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN mrpl4 PE 3 SV 1
blastp_uniprot_sprot sp|A6SLT9|RM04_BOTFB 34 95 + 62 Gaps:8 25.40 252 43.75 2e-06 54S ribosomal protein L4 mitochondrial OS Botryotinia fuckeliana (strain B05.10) GN mrpl4 PE 3 SV 1
rpsblast_cdd gnl|CDD|148544 34 109 + 76 Gaps:3 83.91 87 52.05 2e-20 pfam06984 MRP-L47 Mitochondrial 39-S ribosomal protein L47 (MRP-L47). This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins in that they fulfil similar functions in protein biosynthesis. However they are distinct in number features and primary structure.
rpsblast_kog gnl|CDD|38541 1 109 + 109 Gaps:13 54.46 213 39.66 2e-23 KOG3331 KOG3331 KOG3331 Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation ribosomal structure and biogenesis].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 25 109 85 PTHR21183 none none IPR010729
PANTHER 25 109 85 PTHR21183:SF18 none none none
Pfam 34 109 76 PF06984 none Mitochondrial 39-S ribosomal protein L47 (MRP-L47) IPR010729

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 24 23

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting