Protein : Qrob_P0534910.2 Q. robur
Protein Identifier  ? Qrob_P0534910.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K03043 - DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 513  
Kegg Orthology  K03043
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PrpeC_p013 1 512 + 512 Gaps:89 56.45 1070 75.99 0.0 rpoB RNA polymerase beta subunit
blastp_kegg lcl|pmum:18668009 1 512 + 512 Gaps:89 56.45 1070 75.99 0.0 rpoB CP95_p075 RNA polymerase beta subunit
blastp_kegg lcl|sly:3950478 1 512 + 512 Gaps:89 56.45 1070 75.50 0.0 rpoB LyesC2p077 RNA polymerase beta subunit
blastp_kegg lcl|sot:4099994 1 512 + 512 Gaps:89 56.45 1070 75.33 0.0 rpoB SotuCp013 RNA polymerase beta chain
blastp_kegg lcl|tcc:ThcaC_p013 1 512 + 512 Gaps:89 56.45 1070 75.66 0.0 rpoB RNA polymerase beta subunit
blastp_kegg lcl|fve:10251497 1 512 + 512 Gaps:89 56.45 1070 75.66 0.0 rpoB FvH4_C0019 RNA polymerase beta subunit
blastp_kegg lcl|csv:3429302 1 512 + 512 Gaps:89 56.40 1071 75.00 0.0 rpoB CsCp018 RNA polymerase beta chain
blastp_kegg lcl|gmx:3989291 1 512 + 512 Gaps:89 56.45 1070 74.01 0.0 rpoB GlmaCp019 RNA polymerase beta chain
blastp_kegg lcl|cam:6797471 1 512 + 512 Gaps:89 56.45 1070 74.17 0.0 rpoB CiarC_p019 RNA polymerase beta subunit
blastp_kegg lcl|pop:Poptr_cp012 1 512 + 512 Gaps:89 56.45 1070 74.50 0.0 rpoB RNA polymerase beta subunit (EC:2.7.7.6)
blastp_pdb 3iyd_C 16 512 + 497 Gaps:105 43.89 1342 31.75 2e-53 mol:protein length:1342 DNA-directed RNA polymerase subunit beta
blastp_pdb 3eql_M 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3eql_C 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3dxj_M 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 BACTRIAL RNA POLYMERASE BETA SUBUNIT CHAIN C
blastp_pdb 3dxj_C 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 BACTRIAL RNA POLYMERASE BETA SUBUNIT CHAIN C
blastp_pdb 3aoi_M 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoi_H 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoi_C 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoh_M 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_pdb 3aoh_H 13 512 + 500 Gaps:112 54.33 1119 31.91 9e-53 mol:protein length:1119 DNA-directed RNA polymerase subunit beta
blastp_uniprot_sprot sp|P06271|RPOB_TOBAC 1 512 + 512 Gaps:89 56.45 1070 75.99 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana tabacum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q3C1G7|RPOB_NICSY 1 512 + 512 Gaps:89 56.45 1070 75.99 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana sylvestris GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q33C46|RPOB_NICTO 1 512 + 512 Gaps:89 56.45 1070 75.66 0.0 DNA-directed RNA polymerase subunit beta OS Nicotiana tomentosiformis GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8X9|RPOB_ATRBE 1 512 + 512 Gaps:89 56.45 1070 75.83 0.0 DNA-directed RNA polymerase subunit beta OS Atropa belladonna GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q49L06|RPOB_EUCGG 1 512 + 512 Gaps:91 56.53 1072 75.58 0.0 DNA-directed RNA polymerase subunit beta OS Eucalyptus globulus subsp. globulus GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q2MIJ5|RPOB_SOLBU 1 512 + 512 Gaps:89 56.45 1070 75.50 0.0 DNA-directed RNA polymerase subunit beta OS Solanum bulbocastanum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q2MIA8|RPOB_SOLLC 1 512 + 512 Gaps:89 56.45 1070 75.50 0.0 DNA-directed RNA polymerase subunit beta OS Solanum lycopersicum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q2VEI4|RPOB_SOLTU 1 512 + 512 Gaps:89 56.45 1070 75.00 0.0 DNA-directed RNA polymerase subunit beta OS Solanum tuberosum GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|A0A327|RPOB_COFAR 1 512 + 512 Gaps:85 56.29 1066 75.33 0.0 DNA-directed RNA polymerase subunit beta OS Coffea arabica GN rpoB PE 3 SV 1
blastp_uniprot_sprot sp|Q68S14|RPOB_PANGI 1 512 + 512 Gaps:89 56.30 1071 75.12 0.0 DNA-directed RNA polymerase subunit beta OS Panax ginseng GN rpoB PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 443 474 32 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Pfam 436 511 76 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
PANTHER 1 512 512 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
Gene3D 475 512 38 G3DSA:2.40.50.150 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR014724
SUPERFAMILY 5 511 507 SSF64484 none none none
Pfam 306 374 69 PF04565 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 3 IPR007645
Gene3D 5 88 84 G3DSA:3.90.1100.10 none none none
Gene3D 236 439 204 G3DSA:3.90.1100.10 none none none
PANTHER 1 512 512 PTHR20856:SF20 none none none
Pfam 2 301 300 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644
Gene3D 91 235 145 G3DSA:3.90.1110.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007642
Pfam 91 244 154 PF04561 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 2 IPR007642

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting