Protein : Qrob_P0534780.2 Q. robur
Protein Identifier  ? Qrob_P0534780.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=15) 2.7.7.49 - RNA-directed DNA polymerase. Code Enzyme  EC:2.7.7.49
Gene Prediction Quality  validated Protein length 

Sequence

Length: 455  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264128 17 454 + 438 none 57.86 757 77.85 9e-171 putative COX1/OXI3 intron 2 protein-like
blastp_kegg lcl|cit:102607317 12 454 + 443 Gaps:2 56.12 800 75.06 8e-168 uncharacterized LOC102607317
blastp_kegg lcl|tcc:TCM_033550 2 454 + 453 Gaps:1 60.93 750 72.65 3e-166 RNA-directed DNA polymerase
blastp_kegg lcl|rcu:RCOM_0160820 1 454 + 454 Gaps:5 60.32 751 71.74 6e-162 RNA binding protein putative
blastp_kegg lcl|gmx:100812449 22 454 + 433 Gaps:9 60.74 726 70.29 1e-157 uncharacterized LOC100812449
blastp_kegg lcl|mtr:MTR_4g087390 1 454 + 454 Gaps:3 44.35 1017 66.96 1e-156 Beta-ketoacyl-ACP reductase-like protein
blastp_kegg lcl|mdm:103448365 11 454 + 444 none 57.96 766 75.00 1e-156 uncharacterized LOC103448365
blastp_kegg lcl|gmx:100817946 2 454 + 453 Gaps:13 63.52 732 67.53 3e-156 uncharacterized LOC100817946
blastp_kegg lcl|fve:101298146 2 454 + 453 Gaps:4 56.09 804 72.06 4e-156 uncharacterized protein LOC101298146
blastp_kegg lcl|sot:102587557 15 454 + 440 Gaps:2 58.53 762 65.92 2e-154 uncharacterized LOC102587557
blastp_uniprot_sprot sp|P05511|YMC6_SCHPO 63 149 + 87 Gaps:1 10.66 807 34.88 6e-06 Uncharacterized 91 kDa protein in cob intron OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPMIT.06 PE 4 SV 4
rpsblast_cdd gnl|CDD|110356 255 379 + 125 Gaps:9 81.69 142 34.48 5e-17 pfam01348 Intron_maturas2 Type II intron maturase. Group II introns use intron-encoded reverse transcriptase maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.
rpsblast_cdd gnl|CDD|73157 50 160 + 111 Gaps:2 49.12 226 26.13 2e-12 cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements which lack long terminal repeats (LTRs)..
rpsblast_kog gnl|CDD|39965 24 430 + 407 Gaps:88 60.68 796 21.74 4e-16 KOG4768 KOG4768 KOG4768 Mitochondrial mRNA maturase [RNA processing and modification].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 260 367 108 PF01348 none Type II intron maturase IPR024937
Coils 228 249 22 Coil none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting