Protein : Qrob_P0534640.2 Q. robur
Protein Identifier  ? Qrob_P0534640.2 Organism . Name  Quercus robur
Score  43.8 Score Type  egn
Protein Description  (M=6) PF00078//PF01348 - Reverse transcriptase (RNA-dependent DNA polymerase) // Type II intron maturase Gene Prediction Quality  validated
Protein length 

Sequence

Length: 759  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264128 48 758 + 711 Gaps:20 94.98 757 76.22 0.0 putative COX1/OXI3 intron 2 protein-like
blastp_kegg lcl|mdm:103448365 1 758 + 758 Gaps:28 100.00 766 71.93 0.0 uncharacterized LOC103448365
blastp_kegg lcl|cit:102607317 43 758 + 716 Gaps:18 91.00 800 71.84 0.0 uncharacterized LOC102607317
blastp_kegg lcl|tcc:TCM_033550 43 758 + 716 Gaps:21 96.93 750 71.94 0.0 RNA-directed DNA polymerase
blastp_kegg lcl|fve:101298146 1 758 + 758 Gaps:36 93.78 804 71.09 0.0 uncharacterized protein LOC101298146
blastp_kegg lcl|rcu:RCOM_0160820 1 758 + 758 Gaps:37 100.00 751 69.51 0.0 RNA binding protein putative
blastp_kegg lcl|cmo:103501588 1 758 + 758 Gaps:34 100.00 764 67.54 0.0 putative COX1/OXI3 intron 1 protein
blastp_kegg lcl|brp:103847334 1 757 + 757 Gaps:39 99.87 751 67.20 0.0 uncharacterized LOC103847334
blastp_kegg lcl|eus:EUTSA_v10012522mg 40 757 + 718 Gaps:21 68.13 1073 67.03 0.0 hypothetical protein
blastp_kegg lcl|sot:102587557 24 758 + 735 Gaps:27 97.11 762 63.24 0.0 uncharacterized LOC102587557
blastp_uniprot_sprot sp|P03876|AI2M_YEAST 56 375 + 320 Gaps:38 40.75 854 23.56 1e-13 Putative COX1/OXI3 intron 2 protein OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN aI2 PE 1 SV 2
blastp_uniprot_sprot sp|P38478|YMF40_MARPO 85 368 + 284 Gaps:34 61.75 502 25.81 2e-13 Uncharacterized mitochondrial protein ymf40 OS Marchantia polymorpha GN YMF40 PE 4 SV 1
blastp_uniprot_sprot sp|B1N1A3|NICA_PSEPU 84 372 + 289 Gaps:61 51.46 618 23.90 8e-12 Putative nicotine oxidoreductase OS Pseudomonas putida GN nicA PE 4 SV 1
blastp_uniprot_sprot sp|P03875|AI1M_YEAST 112 391 + 280 Gaps:43 36.33 834 24.09 3e-10 Putative COX1/OXI3 intron 1 protein OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN aI1 PE 1 SV 2
blastp_uniprot_sprot sp|P05511|YMC6_SCHPO 143 372 + 230 Gaps:34 31.97 807 25.58 8e-10 Uncharacterized 91 kDa protein in cob intron OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPMIT.06 PE 4 SV 4
blastp_uniprot_sprot sp|Q47688|YKFC_ECOLI 143 371 + 229 Gaps:14 63.03 376 24.89 9e-08 Putative uncharacterized protein YkfC OS Escherichia coli (strain K12) GN ykfC PE 5 SV 2
blastp_uniprot_sprot sp|P0A3U1|LTRA_LACLM 143 290 + 148 Gaps:4 24.37 599 28.08 9e-06 Group II intron-encoded protein LtrA OS Lactococcus lactis subsp. cremoris (strain MG1363) GN ltrA PE 1 SV 1
blastp_uniprot_sprot sp|P0A3U0|LTRA_LACLC 143 290 + 148 Gaps:4 24.37 599 28.08 9e-06 Group II intron-encoded protein LtrA OS Lactococcus lactis subsp. cremoris GN ltrA PE 1 SV 1
rpsblast_cdd gnl|CDD|73157 142 371 + 230 Gaps:19 94.25 226 26.29 4e-30 cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements which lack long terminal repeats (LTRs)..
rpsblast_cdd gnl|CDD|110356 540 661 + 122 Gaps:3 85.21 142 31.40 3e-17 pfam01348 Intron_maturas2 Type II intron maturase. Group II introns use intron-encoded reverse transcriptase maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.
rpsblast_kog gnl|CDD|39965 63 732 + 670 Gaps:70 65.83 796 24.43 2e-16 KOG4768 KOG4768 KOG4768 Mitochondrial mRNA maturase [RNA processing and modification].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 509 530 22 Coil none none none
Pfam 144 371 228 PF00078 none Reverse transcriptase (RNA-dependent DNA polymerase) IPR000477
SUPERFAMILY 307 399 93 SSF56672 none none none
SUPERFAMILY 144 279 136 SSF56672 none none none
ProSiteProfiles 1 371 371 PS50878 none Reverse transcriptase (RT) catalytic domain profile. IPR000477
Pfam 546 655 110 PF01348 none Type II intron maturase IPR024937

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting