Protein : Qrob_P0532660.2 Q. robur
Protein Identifier  ? Qrob_P0532660.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR11467//PTHR11467:SF29 - HISTONE H1/H5 // SUBFAMILY NOT NAMED (PTHR11467:SF29) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 195  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0006334 nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO:0000785 chromatin The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa012096mg 1 194 + 194 Gaps:13 100.00 183 77.60 2e-75 hypothetical protein
blastp_kegg lcl|pmum:103328585 1 194 + 194 Gaps:13 100.00 183 77.05 6e-75 HMG-Y-related protein A-like
blastp_kegg lcl|fve:101308614 1 194 + 194 Gaps:13 100.00 183 75.41 7e-73 HMG-Y-related protein A-like
blastp_kegg lcl|mdm:103405821 1 194 + 194 Gaps:13 100.00 183 71.58 1e-66 HMG-Y-related protein A-like
blastp_kegg lcl|mdm:103421894 1 188 + 188 Gaps:12 96.17 183 71.59 2e-66 HMG-Y-related protein A-like
blastp_kegg lcl|tcc:TCM_019130 1 191 + 191 Gaps:13 94.74 190 69.44 3e-66 High mobility group A isoform 1
blastp_kegg lcl|pxb:103961011 1 188 + 188 Gaps:12 96.17 183 71.59 2e-65 HMG-Y-related protein A-like
blastp_kegg lcl|mdm:103444193 1 188 + 188 Gaps:12 96.17 183 71.02 2e-65 HMG-Y-related protein A-like
blastp_kegg lcl|pxb:103927254 1 194 + 194 Gaps:13 100.00 183 70.49 1e-64 HMG-Y-related protein A-like
blastp_kegg lcl|pop:POPTR_0004s08590g 1 194 + 194 Gaps:11 100.00 189 68.78 1e-64 POPTRDRAFT_817912 HMGI/Y family protein
blastp_uniprot_sprot sp|Q00423|HMGYA_SOYBN 1 193 + 193 Gaps:18 99.43 176 68.00 9e-58 HMG-Y-related protein A OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|Q10370|HMGYB_SOYBN 25 193 + 169 Gaps:18 99.34 152 65.56 3e-42 HMG-Y-related protein B (Fragment) OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|P26569|H12_ARATH 11 96 + 86 Gaps:8 34.43 273 35.11 5e-07 Histone H1.2 OS Arabidopsis thaliana GN At2g30620 PE 1 SV 1
blastp_uniprot_sprot sp|P08283|H1_PEA 9 76 + 68 none 25.66 265 44.12 1e-06 Histone H1 OS Pisum sativum PE 2 SV 1
blastp_uniprot_sprot sp|P40267|H1_SOLPN 13 76 + 64 Gaps:1 32.18 202 38.46 1e-06 Histone H1 OS Solanum pennellii PE 2 SV 1
blastp_uniprot_sprot sp|P37218|H1_SOLLC 13 76 + 64 none 22.30 287 43.75 5e-06 Histone H1 OS Solanum lycopersicum PE 3 SV 1
rpsblast_cdd gnl|CDD|197772 9 74 + 66 none 100.00 66 45.45 7e-16 smart00526 H15 Domain in histone families 1 and 5.
rpsblast_cdd gnl|CDD|201291 11 74 + 64 Gaps:2 85.71 77 40.91 1e-09 pfam00538 Linker_histone linker histone H1 and H5 family. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 7 184 178 PTHR11467:SF29 none none IPR031059
Gene3D 8 85 78 G3DSA:1.10.10.10 none none IPR011991
PRINTS 86 96 11 PR00929 none AT-hook-like domain signature IPR020478
PRINTS 141 151 11 PR00929 none AT-hook-like domain signature IPR020478
PRINTS 106 117 12 PR00929 none AT-hook-like domain signature IPR020478
PANTHER 7 184 178 PTHR11467 none none none
PRINTS 132 151 20 PR00930 none High mobility group protein (HMGY) signature IPR000116
PRINTS 84 96 13 PR00930 none High mobility group protein (HMGY) signature IPR000116
Pfam 174 185 12 PF02178 none AT hook motif IPR017956
Pfam 143 153 11 PF02178 none AT hook motif IPR017956
Pfam 87 94 8 PF02178 none AT hook motif IPR017956
Pfam 109 119 11 PF02178 none AT hook motif IPR017956
SMART 143 155 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 108 120 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 86 98 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 174 186 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SUPERFAMILY 8 87 80 SSF46785 none none none
Pfam 12 73 62 PF00538 none linker histone H1 and H5 family IPR005818
ProSiteProfiles 11 80 70 PS51504 none Linker histone H1/H5 globular (H15) domain profile. IPR005818
SMART 9 75 67 SM00526 none Domain in histone families 1 and 5 IPR005818

0 Localization

0 Qtllist

0 Targeting