Protein : Qrob_P0528210.2 Q. robur
Protein Identifier  ? Qrob_P0528210.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K02712 - photosystem II PsbK protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 65  
Kegg Orthology  K02712
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0009539 photosystem II reaction center An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:Poptr_cp003 1 64 + 64 none 100.00 64 90.62 5e-31 psbK photosystem II protein K
blastp_kegg lcl|mtr:MetrCp049 4 64 + 61 none 100.00 61 90.16 2e-29 psbK photosystem II protein K
blastp_kegg lcl|mtr:MTR_4g050880 4 64 + 61 none 100.00 61 90.16 2e-29 Photosystem II reaction center protein K
blastp_kegg lcl|rcu:RCOM_ORF00009 4 64 + 61 none 100.00 61 90.16 4e-29 psbK photosystem II protein K
blastp_kegg lcl|vvi:4025108 4 64 + 61 none 100.00 61 90.16 2e-28 psbK ViviCp004 PSII K protein
blastp_kegg lcl|tcc:ThcaC_p004 4 64 + 61 none 100.00 61 90.16 3e-28 psbK photosystem II protein K
blastp_kegg lcl|mtr:MTR_4g034830 1 60 + 60 none 41.67 144 88.33 2e-27 Photosystem II reaction center protein K
blastp_kegg lcl|cam:6797482 4 64 + 61 none 100.00 61 85.25 3e-27 psbK CiarC_p028 photosystem II protein K
blastp_kegg lcl|cam:101491428 4 64 + 61 none 100.00 61 85.25 3e-27 psbK photosystem II reaction center protein K-like
blastp_kegg lcl|pvu:PhvuCp31 4 64 + 61 none 100.00 61 83.61 6e-27 psbK photosystem II protein K
blastp_pdb 3arc_K 28 64 + 37 none 100.00 37 72.97 1e-12 mol:protein length:37 Photosystem II reaction center protein K
blastp_pdb 2axt_K 28 64 + 37 none 100.00 37 72.97 1e-12 mol:protein length:37 Photosystem II reaction center protein K
blastp_pdb 1s5l_K 28 64 + 37 none 100.00 37 72.97 1e-12 mol:protein length:37 Photosystem II reaction center protein K
blastp_pdb 3a0h_K 28 63 + 36 none 100.00 36 72.22 2e-10 mol:protein length:36 Photosystem II reaction center protein K
blastp_pdb 3a0b_K 28 63 + 36 none 100.00 36 72.22 2e-10 mol:protein length:36 Photosystem II reaction center protein K
blastp_pdb 3prr_K 28 64 + 37 none 100.00 37 72.97 1e-12 mol:protein length:37 Photosystem II reaction center protein K
blastp_pdb 3prq_K 28 64 + 37 none 100.00 37 72.97 1e-12 mol:protein length:37 Photosystem II reaction center protein K
blastp_pdb 3kzi_K 28 64 + 37 none 100.00 37 72.97 1e-12 mol:protein length:37 Photosystem II reaction center protein K
blastp_pdb 3bz2_K 28 64 + 37 none 100.00 37 72.97 1e-12 mol:protein length:37 Photosystem II reaction center protein K
blastp_pdb 3bz1_K 28 64 + 37 none 100.00 37 72.97 1e-12 mol:protein length:37 Photosystem II reaction center protein K
blastp_uniprot_sprot sp|Q14FH4|PSBK_POPAL 4 64 + 61 none 100.00 61 90.16 1e-30 Photosystem II reaction center protein K OS Populus alba GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|Q06H14|PSBK_DRIGR 4 64 + 61 none 100.00 61 90.16 2e-30 Photosystem II reaction center protein K OS Drimys granadensis GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|Q49L15|PSBK_EUCGG 4 64 + 61 none 100.00 61 90.16 3e-30 Photosystem II reaction center protein K OS Eucalyptus globulus subsp. globulus GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZJ37|PSBK_VITVI 4 64 + 61 none 100.00 61 90.16 6e-30 Photosystem II reaction center protein K OS Vitis vinifera GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|Q68S23|PSBK_PANGI 4 64 + 61 none 100.00 61 90.16 7e-30 Photosystem II reaction center protein K OS Panax ginseng GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|Q6EW65|PSBK_NYMAL 4 64 + 61 none 100.00 61 88.52 8e-30 Photosystem II reaction center protein K OS Nymphaea alba GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9N6|PSBK_LIRTU 4 64 + 61 none 100.00 61 86.89 2e-29 Photosystem II reaction center protein K OS Liriodendron tulipifera GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|Q09X34|PSBK_MORIN 4 64 + 61 none 100.00 61 88.52 2e-29 Photosystem II reaction center protein K OS Morus indica GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|Q2L8Z0|PSBK_GOSHI 4 64 + 61 none 100.00 61 88.52 3e-29 Photosystem II reaction center protein K OS Gossypium hirsutum GN psbK PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ18|PSBK_GOSBA 4 64 + 61 none 100.00 61 88.52 3e-29 Photosystem II reaction center protein K OS Gossypium barbadense GN psbK PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 21 43 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 44 63 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 28 64 37 SSF161037 none none none
Phobius 64 64 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 24 64 41 PF02533 none Photosystem II 4 kDa reaction centre component IPR003687
ProDom 28 64 37 PD004458 none PHOTOSYSTEM II K CHLOROPLAST CENTER REACTION PSII-K PHOTOSYNTHESIS PRECURSOR PLASTID IPR003687
Phobius 7 15 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 16 20 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 20 19
TMHMM 2 24 22
TMHMM 39 61 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting