Protein : Qrob_P0528100.2 Q. robur
Protein Identifier  ? Qrob_P0528100.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG1750//KOG3291 - Mitochondrial/chloroplast ribosomal protein S12 [Translation ribosomal structure and biogenesis]. // Ribosomal protein S7 [Translation ribosomal structure and biogenesis]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 309  
Kegg Orthology  K02992
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101508960 18 304 + 287 Gaps:62 29.28 864 76.68 8e-115 NAD(P)H-quinone oxidoreductase subunit 2 B chloroplastic-like
blastp_kegg lcl|mtr:MTR_3g035660 23 304 + 282 Gaps:65 28.59 871 76.31 8e-111 NAD(P)H-quinone oxidoreductase subunit 2 A
blastp_kegg lcl|pda:8890587 159 308 + 150 none 96.77 155 91.33 8e-93 rps7 PhdaC_p085 30S ribosomal protein S7
blastp_kegg lcl|pda:8890606 159 308 + 150 none 96.77 155 91.33 8e-93 rps7 PhdaC_p069 30S ribosomal protein S7
blastp_kegg lcl|gmx:3989376 159 308 + 150 none 96.77 155 91.33 1e-92 rps7 GlmaCp079 30S ribosomal protein S7
blastp_kegg lcl|gmx:3989343 159 308 + 150 none 96.77 155 91.33 1e-92 rps7 GlmaCp065 30S ribosomal protein S7
blastp_kegg lcl|gmx:100306140 143 308 + 166 Gaps:3 94.22 173 85.89 2e-92 uncharacterized LOC100306140
blastp_kegg lcl|tcc:ThcaC_p078 159 308 + 150 none 96.77 155 91.33 4e-92 rps7 ribosomal protein S7
blastp_kegg lcl|tcc:ThcaC_p065 159 308 + 150 none 96.77 155 91.33 4e-92 rps7 ribosomal protein S7
blastp_kegg lcl|eus:EUTSA_v10011843mg 159 308 + 150 none 96.77 155 91.33 4e-92 hypothetical protein
blastp_pdb 3bbn_G 159 308 + 150 none 96.77 155 88.67 4e-92 mol:protein length:155 Ribosomal Protein S7
blastp_pdb 3gty_S 167 308 + 142 none 95.30 149 46.48 2e-39 mol:protein length:149 30S ribosomal protein S7
blastp_pdb 3pyu_G 158 308 + 151 none 97.42 155 44.37 8e-39 mol:protein length:155 30S ribosomal protein S7
blastp_pdb 3pys_G 158 308 + 151 none 97.42 155 44.37 8e-39 mol:protein length:155 30S ribosomal protein S7
blastp_pdb 3pyq_G 158 308 + 151 none 97.42 155 44.37 8e-39 mol:protein length:155 30S ribosomal protein S7
blastp_pdb 3pyn_G 158 308 + 151 none 97.42 155 44.37 8e-39 mol:protein length:155 30S ribosomal protein S7
blastp_pdb 3ms0_G 158 308 + 151 none 97.42 155 44.37 8e-39 mol:protein length:155 30S ribosomal protein S7
blastp_pdb 3mr8_G 158 308 + 151 none 97.42 155 44.37 8e-39 mol:protein length:155 30S ribosomal protein S7
blastp_pdb 3fic_G 158 308 + 151 none 97.42 155 44.37 8e-39 mol:protein length:155 30S ribosomal protein S7
blastp_pdb 2zm6_G 158 308 + 151 none 97.42 155 44.37 8e-39 mol:protein length:155 30S ribosomal protein S7
blastp_uniprot_sprot sp|B1NWJ5|RR7_MANES 159 308 + 150 none 96.77 155 92.00 4e-94 30S ribosomal protein S7 chloroplastic OS Manihot esculenta GN rps7-A PE 3 SV 1
blastp_uniprot_sprot sp|Q49KT8|RR7_EUCGG 159 308 + 150 none 96.77 155 92.00 4e-94 30S ribosomal protein S7 chloroplastic OS Eucalyptus globulus subsp. globulus GN rps7-A PE 3 SV 1
blastp_uniprot_sprot sp|P07135|RR7_SOYBN 159 308 + 150 none 96.77 155 91.33 5e-94 30S ribosomal protein S7 chloroplastic OS Glycine max GN rps7-A PE 3 SV 1
blastp_uniprot_sprot sp|Q9GFM9|RR7_CABCA 159 308 + 150 none 96.77 155 92.00 5e-94 30S ribosomal protein S7 chloroplastic OS Cabomba caroliniana GN rps7 PE 3 SV 1
blastp_uniprot_sprot sp|Q6EM99|RR7_EUOAL 159 308 + 150 none 96.77 155 91.33 9e-94 30S ribosomal protein S7 chloroplastic OS Euonymus alatus GN rps7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9MSP1|RR7_NYMOD 159 308 + 150 none 96.77 155 91.33 1e-93 30S ribosomal protein S7 chloroplastic OS Nymphaea odorata GN rps7 PE 3 SV 1
blastp_uniprot_sprot sp|Q6EVZ0|RR7_NYMAL 159 308 + 150 none 96.77 155 91.33 1e-93 30S ribosomal protein S7 chloroplastic OS Nymphaea alba GN rps7-A PE 3 SV 1
blastp_uniprot_sprot sp|A4QJX6|RR7_OLIPU 159 308 + 150 none 96.77 155 91.33 1e-93 30S ribosomal protein S7 chloroplastic OS Olimarabidopsis pumila GN rps7-A PE 3 SV 1
blastp_uniprot_sprot sp|A4QLX9|RR7_NASOF 159 308 + 150 none 96.77 155 91.33 1e-93 30S ribosomal protein S7 chloroplastic OS Nasturtium officinale GN rps7-A PE 3 SV 1
blastp_uniprot_sprot sp|A4QLP0|RR7_LOBMA 159 308 + 150 none 96.77 155 91.33 1e-93 30S ribosomal protein S7 chloroplastic OS Lobularia maritima GN rps7-A PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 158 308 151 TIGR01029 none rpsG_bact: ribosomal protein uS7 IPR005717
SUPERFAMILY 155 302 148 SSF47973 none none IPR023798
PRINTS 73 90 18 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 54 73 20 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 90 106 17 PR01034 none Ribosomal protein S12 signature IPR005679
Pfam 159 302 144 PF00177 none Ribosomal protein S7p/S5e IPR023798
ProSitePatterns 173 199 27 PS00052 none Ribosomal protein S7 signature. IPR020606
Hamap 141 308 168 MF_00480_B none 30S ribosomal protein S7 [rpsG]. IPR005717
PANTHER 158 308 151 PTHR11205 none none IPR000235
SUPERFAMILY 49 111 63 SSF50249 none none IPR012340
Gene3D 49 111 63 G3DSA:2.40.50.140 none none IPR012340
Pfam 49 111 63 PF00164 none Ribosomal protein S12/S23 IPR006032
Gene3D 154 302 149 G3DSA:1.10.455.10 none none IPR023798

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting