Protein : Qrob_P0524950.2 Q. robur
Protein Identifier  ? Qrob_P0524950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12151:SF5 - SENC Gene Prediction Quality  validated
Protein length 

Sequence

Length: 312  
Kegg Orthology  K07152
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005507 copper ion binding Interacting selectively and non-covalently with copper (Cu) ions.
GO:0005743 mitochondrial inner membrane The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
GO:0006825 copper ion transport The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0006878 cellular copper ion homeostasis Any process involved in the maintenance of an internal steady state of copper ions at the level of a cell.
GO:0008535 respiratory chain complex IV assembly The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341670 1 311 + 311 Gaps:26 100.00 315 75.87 1e-174 protein SCO1 homolog 1 mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa008999mg 1 311 + 311 Gaps:26 100.00 311 74.92 6e-167 hypothetical protein
blastp_kegg lcl|pxb:103940199 1 310 + 310 Gaps:28 100.00 318 73.58 2e-165 protein SCO1 homolog 1 mitochondrial-like
blastp_kegg lcl|cit:102615149 1 310 + 310 Gaps:11 100.00 321 71.03 1e-163 protein SCO1 homolog 1 mitochondrial-like
blastp_kegg lcl|pxb:103930529 1 310 + 310 Gaps:31 100.00 321 72.27 2e-163 protein SCO1 homolog 1 mitochondrial-like
blastp_kegg lcl|fve:101307927 7 310 + 304 Gaps:21 99.35 309 73.94 4e-161 protein SCO1 homolog 1 mitochondrial-like
blastp_kegg lcl|mdm:103426017 1 310 + 310 Gaps:24 100.00 320 71.25 2e-159 protein SCO1 homolog 1 mitochondrial
blastp_kegg lcl|pxb:103965136 1 310 + 310 Gaps:29 100.00 321 69.16 5e-156 protein SCO1 homolog 1 mitochondrial
blastp_kegg lcl|cmo:103502140 1 310 + 310 Gaps:26 100.00 324 68.52 5e-155 protein SCO1 homolog 1 mitochondrial
blastp_kegg lcl|csv:101212664 1 310 + 310 Gaps:16 100.00 324 67.90 2e-152 protein SCO1 homolog 1 mitochondrial-like
blastp_pdb 2gvp_A 144 311 + 168 Gaps:2 98.27 173 52.35 4e-62 mol:protein length:173 SCO1 protein homolog mitochondrial
blastp_pdb 2gt6_A 144 311 + 168 Gaps:2 98.27 173 52.35 4e-62 mol:protein length:173 SCO1 protein homolog mitochondrial
blastp_pdb 2gt5_A 144 311 + 168 Gaps:2 98.27 173 52.35 4e-62 mol:protein length:173 SCO1 protein homolog mitochondrial
blastp_pdb 2gqm_A 144 311 + 168 Gaps:2 98.27 173 52.35 4e-62 mol:protein length:173 SCO1 protein homolog mitochondrial
blastp_pdb 2gql_A 144 311 + 168 Gaps:2 98.27 173 52.35 4e-62 mol:protein length:173 SCO1 protein homolog mitochondrial
blastp_pdb 2gqk_A 144 311 + 168 Gaps:2 98.27 173 52.35 4e-62 mol:protein length:173 SCO1 protein homolog mitochondrial
blastp_pdb 2hrn_A 144 311 + 168 Gaps:2 98.27 173 51.76 2e-60 mol:protein length:173 SCO1 protein homolog mitochondrial
blastp_pdb 2hrf_A 144 311 + 168 Gaps:2 98.27 173 51.76 2e-60 mol:protein length:173 SCO1 protein homolog mitochondrial
blastp_pdb 2ggt_B 149 309 + 161 Gaps:2 99.39 164 52.76 1e-59 mol:protein length:164 SCO1 protein homolog mitochondrial
blastp_pdb 2ggt_A 149 309 + 161 Gaps:2 99.39 164 52.76 1e-59 mol:protein length:164 SCO1 protein homolog mitochondrial
blastp_uniprot_sprot sp|Q8VYP0|SCO11_ARATH 1 310 + 310 Gaps:24 100.00 334 58.38 5e-135 Protein SCO1 homolog 1 mitochondrial OS Arabidopsis thaliana GN HCC1 PE 2 SV 1
blastp_uniprot_sprot sp|O75880|SCO1_HUMAN 91 311 + 221 Gaps:7 72.43 301 45.87 3e-65 Protein SCO1 homolog mitochondrial OS Homo sapiens GN SCO1 PE 1 SV 1
blastp_uniprot_sprot sp|A1A4J8|SCO1_BOVIN 85 311 + 227 Gaps:7 73.44 305 44.64 7e-63 Protein SCO1 homolog mitochondrial OS Bos taurus GN SCO1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5SUC9|SCO1_MOUSE 92 311 + 220 Gaps:7 76.41 284 44.70 2e-62 Protein SCO1 homolog mitochondrial OS Mus musculus GN Sco1 PE 2 SV 1
blastp_uniprot_sprot sp|O42899|SCO1_SCHPO 75 311 + 237 Gaps:9 88.97 263 41.03 2e-57 Protein sco1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sco1 PE 3 SV 1
blastp_uniprot_sprot sp|P23833|SCO1_YEAST 91 308 + 218 Gaps:11 73.56 295 41.94 2e-53 Protein SCO1 mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SCO1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VCL2|SCO2_MOUSE 80 308 + 229 Gaps:12 89.02 255 40.53 5e-53 Protein SCO2 homolog mitochondrial OS Mus musculus GN Sco2 PE 2 SV 1
blastp_uniprot_sprot sp|A6H784|SCO2_BOVIN 109 309 + 201 Gaps:10 74.06 266 42.64 3e-52 Protein SCO2 homolog mitochondrial OS Bos taurus GN SCO2 PE 2 SV 1
blastp_uniprot_sprot sp|O43819|SCO2_HUMAN 122 309 + 188 Gaps:10 69.17 266 43.48 2e-51 Protein SCO2 homolog mitochondrial OS Homo sapiens GN SCO2 PE 1 SV 3
blastp_uniprot_sprot sp|P38072|SCO2_YEAST 103 308 + 206 Gaps:7 67.44 301 40.39 4e-51 Protein SCO2 mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SCO2 PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 106 310 205 G3DSA:3.40.30.10 none none IPR012336
PANTHER 38 311 274 PTHR12151:SF5 none none none
Phobius 1 100 100 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 42 311 270 PIRSF037736 none none IPR017276
Pfam 137 288 152 PF02630 none SCO1/SenC IPR003782
ProSiteProfiles 142 307 166 PS51352 none Thioredoxin domain profile. IPR012336
PANTHER 38 311 274 PTHR12151 none none IPR003782
SUPERFAMILY 148 307 160 SSF52833 none none IPR012336
Phobius 101 120 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 121 311 191 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 101 120 19

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting