Protein : Qrob_P0523430.2 Q. robur
Protein Identifier  ? Qrob_P0523430.2 Organism . Name  Quercus robur
Score  22.3 Score Type  egn
Protein Description  (M=2) PTHR12505:SF19 - BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN-RELATED (PTHR12505:SF19) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 398  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_028427 1 375 + 375 Gaps:25 66.91 538 48.33 7e-90 Bromo-adjacent domain-containing protein putative isoform 1
blastp_kegg lcl|mdm:103426984 9 306 + 298 Gaps:6 93.67 316 47.97 4e-79 uncharacterized LOC103426984
blastp_kegg lcl|pxb:103926578 9 305 + 297 Gaps:6 58.88 501 47.80 2e-76 uncharacterized LOC103926578
blastp_kegg lcl|rcu:RCOM_0897260 15 347 + 333 Gaps:34 60.04 508 47.54 2e-66 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s17460g 1 307 + 307 Gaps:35 83.18 327 48.90 8e-66 POPTRDRAFT_548624 hypothetical protein
blastp_kegg lcl|pmum:103328053 1 288 + 288 Gaps:17 56.11 483 47.97 1e-65 uncharacterized LOC103328053
blastp_kegg lcl|pvu:PHAVU_005G1742001 9 201 + 193 Gaps:1 64.21 299 54.17 5e-61 hypothetical protein
blastp_kegg lcl|gmx:102661815 1 208 + 208 Gaps:17 43.75 496 53.00 3e-58 uncharacterized LOC102661815
blastp_kegg lcl|brp:103869897 10 352 + 343 Gaps:50 56.22 571 42.68 9e-57 uncharacterized LOC103869897
blastp_kegg lcl|crb:CARUB_v10016118mg 10 309 + 300 Gaps:16 62.01 458 41.90 4e-56 hypothetical protein
rpsblast_cdd gnl|CDD|72855 14 171 + 158 Gaps:5 100.00 159 46.54 7e-41 cd04715 BAH_Orc1p_like BAH or Bromo Adjacent Homology domain as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_cdd gnl|CDD|72847 41 158 + 118 Gaps:11 91.87 123 27.43 3e-07 cd04370 BAH BAH or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p) where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p) confirming the initial hypothesis that BAH plays a role in protein-protein interactions..

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 9 174 166 PTHR12505 none none none
Pfam 50 153 104 PF01426 none BAH domain IPR001025
PANTHER 9 174 166 PTHR12505:SF19 none none none
ProSiteProfiles 41 167 127 PS51038 none BAH domain profile. IPR001025
Phobius 395 397 3 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 375 394 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 374 374 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 375 394 19

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting