Protein : Qrob_P0521290.2 Q. robur
Protein Identifier  ? Qrob_P0521290.2 Organism . Name  Quercus robur
Score  79.2 Score Type  egn
Protein Description  (M=1) 2.1.1.189 - 23S rRNA (uracil(747)-C(5))-methyltransferase. Code Enzyme  EC:2.1.1.190, EC:2.1.1.189
Gene Prediction Quality  validated Protein length 

Sequence

Length: 574  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0008173 RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103342867 1 572 + 572 Gaps:38 99.82 541 83.33 0.0 tRNA (uracil-5-)-methyltransferase homolog A
blastp_kegg lcl|pper:PRUPE_ppa003907mg 1 572 + 572 Gaps:40 99.82 541 83.70 0.0 hypothetical protein
blastp_kegg lcl|mdm:103453539 1 572 + 572 Gaps:43 99.82 558 80.43 0.0 tRNA (uracil-5-)-methyltransferase homolog A
blastp_kegg lcl|fve:101304863 1 573 + 573 Gaps:30 100.00 543 79.74 0.0 uncharacterized RNA methyltransferase CT0009-like
blastp_kegg lcl|pxb:103930520 1 572 + 572 Gaps:31 99.82 542 81.33 0.0 tRNA (uracil-5-)-methyltransferase homolog A
blastp_kegg lcl|csv:101229063 1 572 + 572 Gaps:30 98.58 562 77.98 0.0 uncharacterized LOC101229063
blastp_kegg lcl|csv:101215920 1 572 + 572 Gaps:30 98.58 562 77.98 0.0 uncharacterized LOC101215920
blastp_kegg lcl|vvi:100261689 1 572 + 572 Gaps:35 94.91 570 80.59 0.0 uncharacterized LOC100261689
blastp_kegg lcl|pop:POPTR_0001s19990g 63 572 + 510 Gaps:21 86.55 565 87.53 0.0 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10020447mg 1 573 + 573 Gaps:27 99.82 549 77.37 0.0 hypothetical protein
blastp_pdb 2vs1_A 67 570 + 504 Gaps:100 96.00 425 36.03 5e-44 mol:protein length:425 UNCHARACTERIZED RNA METHYLTRANSFERASE PYRAB10
blastp_pdb 2jjq_A 67 570 + 504 Gaps:100 96.00 425 36.03 5e-44 mol:protein length:425 UNCHARACTERIZED RNA METHYLTRANSFERASE PYRAB10
blastp_pdb 2bh2_B 383 570 + 188 Gaps:17 40.88 433 39.55 1e-21 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_pdb 2bh2_A 383 570 + 188 Gaps:17 40.88 433 39.55 1e-21 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_pdb 1uwv_A 383 570 + 188 Gaps:17 40.88 433 39.55 1e-21 mol:protein length:433 23S RRNA (URACIL-5-)-METHYLTRANSFERASE RUMA
blastp_pdb 3bt7_B 382 570 + 189 Gaps:28 50.68 369 28.88 1e-13 mol:protein length:369 tRNA (uracil-5-)-methyltransferase
blastp_pdb 3bt7_A 382 570 + 189 Gaps:28 50.68 369 28.88 1e-13 mol:protein length:369 tRNA (uracil-5-)-methyltransferase
blastp_uniprot_sprot sp|Q8KGF9|Y009_CHLTE 66 571 + 506 Gaps:50 96.89 483 39.53 2e-93 Uncharacterized RNA methyltransferase CT0009 OS Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN CT0009 PE 3 SV 1
blastp_uniprot_sprot sp|Q8AA22|Y643_BACTN 78 572 + 495 Gaps:60 99.78 454 41.50 7e-92 Uncharacterized RNA methyltransferase BT_0643 OS Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN BT_0643 PE 3 SV 1
blastp_uniprot_sprot sp|Q7MVG9|Y1095_PORGI 77 570 + 494 Gaps:54 98.06 465 41.67 1e-89 Uncharacterized RNA methyltransferase PG_1095 OS Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN PG_1095 PE 3 SV 1
blastp_uniprot_sprot sp|Q9KF10|Y687_BACHD 67 572 + 506 Gaps:69 97.60 458 40.27 2e-84 Uncharacterized RNA methyltransferase BH0687 OS Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN BH0687 PE 3 SV 1
blastp_uniprot_sprot sp|Q73EJ5|Y363_BACC1 66 570 + 505 Gaps:65 96.96 460 40.13 2e-82 Uncharacterized RNA methyltransferase BCE_0363 OS Bacillus cereus (strain ATCC 10987) GN BCE_0363 PE 3 SV 1
blastp_uniprot_sprot sp|Q81ZD6|Y333_BACAN 66 573 + 508 Gaps:65 98.03 458 39.87 5e-82 Uncharacterized RNA methyltransferase BA_0333/GBAA_0333/BAS0318 OS Bacillus anthracis GN BA_0333 PE 3 SV 1
blastp_uniprot_sprot sp|Q814A6|Y364_BACCR 66 572 + 507 Gaps:65 97.82 458 39.51 2e-81 Uncharacterized RNA methyltransferase BC_0364 OS Bacillus cereus (strain ATCC 14579 / DSM 31) GN BC_0364 PE 3 SV 1
blastp_uniprot_sprot sp|Q92AQ7|Y1863_LISIN 66 572 + 507 Gaps:73 98.45 453 38.12 5e-81 Uncharacterized RNA methyltransferase lin1863 OS Listeria innocua serovar 6a (strain CLIP 11262) GN lin1863 PE 3 SV 1
blastp_uniprot_sprot sp|Q71YR7|Y1776_LISMF 66 572 + 507 Gaps:81 98.45 453 38.79 2e-80 Uncharacterized RNA methyltransferase LMOf2365_1776 OS Listeria monocytogenes serotype 4b (strain F2365) GN LMOf2365_1776 PE 3 SV 1
blastp_uniprot_sprot sp|Q8Y6D6|Y1751_LISMO 66 572 + 507 Gaps:81 98.45 453 38.79 9e-80 Uncharacterized RNA methyltransferase lmo1751 OS Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN lmo1751 PE 3 SV 1
rpsblast_cdd gnl|CDD|32446 69 566 + 498 Gaps:78 99.54 432 40.47 4e-93 COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|129571 78 565 + 488 Gaps:63 100.00 431 38.98 3e-78 TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
rpsblast_cdd gnl|CDD|179588 288 571 + 284 Gaps:37 84.76 315 34.83 9e-35 PRK03522 rumB 23S rRNA methyluridine methyltransferase Reviewed.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 34 253 220 PTHR11061 none none none
ProSiteProfiles 64 124 61 PS50926 none TRAM domain profile. IPR002792
Pfam 382 571 190 PF05958 none tRNA (Uracil-5-)-methyltransferase IPR010280
SUPERFAMILY 257 571 315 SSF53335 none none IPR029063
SUPERFAMILY 133 220 88 SSF53335 none none IPR029063
PANTHER 275 572 298 PTHR11061 none none none
TIGRFAM 265 565 301 TIGR00479 none rumA: 23S rRNA (uracil-5-)-methyltransferase RumA IPR001566
PANTHER 34 253 220 PTHR11061:SF30 none none none
PANTHER 275 572 298 PTHR11061:SF30 none none none
Gene3D 65 143 79 G3DSA:2.40.50.140 none none IPR012340
SUPERFAMILY 58 119 62 SSF50249 none none IPR012340
ProSiteProfiles 144 573 430 PS51687 none SAM-dependent methyltransferase RNA m(5)U-type domain profile. IPR010280
ProSitePatterns 555 565 11 PS01231 none RNA methyltransferase trmA family signature 2. IPR030391
Gene3D 358 571 214 G3DSA:3.40.50.150 none none IPR029063

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 11 10

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting