Protein : Qrob_P0517780.2 Q. robur
Protein Identifier  ? Qrob_P0517780.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) 3.5.4.5 - Cytidine deaminase. Code Enzyme  EC:3.5.4.5
Gene Prediction Quality  validated Protein length 

Sequence

Length: 224  
Kegg Orthology  K01489
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO:0004126 cytidine deaminase activity Catalysis of the reaction: cytidine + H2O = uridine + NH3.
GO:0009972 cytidine deamination The removal of amino group in the presence of water.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_037679 51 213 + 163 Gaps:8 50.99 304 70.97 4e-71 Cytidine deaminase
blastp_kegg lcl|vvi:100245702 51 220 + 170 Gaps:14 56.48 301 65.29 1e-66 cytidine deaminase-like
blastp_kegg lcl|pper:PRUPE_ppa009163mg 51 217 + 167 Gaps:13 52.63 304 68.75 9e-66 hypothetical protein
blastp_kegg lcl|pmum:103340745 39 216 + 178 Gaps:13 59.17 289 65.50 1e-65 cytidine deaminase 1-like
blastp_kegg lcl|cmo:103492314 21 217 + 197 Gaps:5 65.33 300 56.12 4e-62 cytidine deaminase 1-like
blastp_kegg lcl|pop:POPTR_0006s15510g 51 213 + 163 Gaps:8 49.84 315 63.69 8e-62 POPTRDRAFT_1080879 cytidine deaminase 1 family protein
blastp_kegg lcl|crb:CARUB_v10014260mg 51 217 + 167 Gaps:8 53.14 303 62.11 7e-61 hypothetical protein
blastp_kegg lcl|cit:102607938 51 222 + 172 Gaps:14 55.45 303 66.67 1e-60 hypothetical protein
blastp_kegg lcl|ath:AT2G19570 4 213 + 210 Gaps:17 70.76 301 51.64 2e-60 CDA1 cytidine deaminase 1
blastp_kegg lcl|cic:CICLE_v10008864mg 21 222 + 202 Gaps:19 58.63 336 59.39 2e-60 hypothetical protein
blastp_pdb 1ctu_A 54 212 + 159 Gaps:22 46.60 294 44.53 3e-17 mol:protein length:294 CYTIDINE DEAMINASE
blastp_pdb 1ctt_A 54 212 + 159 Gaps:22 46.60 294 44.53 3e-17 mol:protein length:294 CYTIDINE DEAMINASE
blastp_pdb 1aln_A 54 212 + 159 Gaps:22 46.60 294 44.53 3e-17 mol:protein length:294 CYTIDINE DEAMINASE
blastp_pdb 1af2_A 54 212 + 159 Gaps:22 46.60 294 44.53 3e-17 mol:protein length:294 CYTIDINE DEAMINASE
blastp_pdb 4eg2_H 54 204 + 151 Gaps:21 43.62 298 40.00 6e-13 mol:protein length:298 Cytidine deaminase
blastp_pdb 4eg2_G 54 204 + 151 Gaps:21 43.62 298 40.00 6e-13 mol:protein length:298 Cytidine deaminase
blastp_pdb 4eg2_F 54 204 + 151 Gaps:21 43.62 298 40.00 6e-13 mol:protein length:298 Cytidine deaminase
blastp_pdb 4eg2_E 54 204 + 151 Gaps:21 43.62 298 40.00 6e-13 mol:protein length:298 Cytidine deaminase
blastp_pdb 4eg2_D 54 204 + 151 Gaps:21 43.62 298 40.00 6e-13 mol:protein length:298 Cytidine deaminase
blastp_pdb 4eg2_C 54 204 + 151 Gaps:21 43.62 298 40.00 6e-13 mol:protein length:298 Cytidine deaminase
blastp_uniprot_sprot sp|C5BCM4|CDD_EDWI9 54 202 + 149 Gaps:20 43.73 295 49.61 2e-19 Cytidine deaminase OS Edwardsiella ictaluri (strain 93-146) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|B4TNP0|CDD_SALSV 54 202 + 149 Gaps:22 43.20 294 47.24 4e-19 Cytidine deaminase OS Salmonella schwarzengrund (strain CVM19633) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|B5EYN3|CDD_SALA4 54 202 + 149 Gaps:22 43.20 294 47.24 4e-19 Cytidine deaminase OS Salmonella agona (strain SL483) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|B5XP65|CDD_KLEP3 54 212 + 159 Gaps:22 46.60 294 43.80 4e-19 Cytidine deaminase OS Klebsiella pneumoniae (strain 342) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|B4SY15|CDD_SALNS 54 202 + 149 Gaps:22 43.20 294 47.24 4e-19 Cytidine deaminase OS Salmonella newport (strain SL254) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|B5FMZ9|CDD_SALDC 54 202 + 149 Gaps:22 43.20 294 47.24 4e-19 Cytidine deaminase OS Salmonella dublin (strain CT_02021853) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|Q8ZNM0|CDD_SALTY 54 202 + 149 Gaps:22 43.20 294 47.24 4e-19 Cytidine deaminase OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|C0Q0V4|CDD_SALPC 54 202 + 149 Gaps:22 43.20 294 47.24 4e-19 Cytidine deaminase OS Salmonella paratyphi C (strain RKS4594) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|A9N6L3|CDD_SALPB 54 202 + 149 Gaps:22 43.20 294 47.24 4e-19 Cytidine deaminase OS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN cdd PE 3 SV 1
blastp_uniprot_sprot sp|B4TAK5|CDD_SALHS 54 202 + 149 Gaps:22 43.20 294 47.24 4e-19 Cytidine deaminase OS Salmonella heidelberg (strain SL476) GN cdd PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 100 211 112 G3DSA:3.40.140.10 none none none
Pfam 54 197 144 PF08211 "KEGG:00240+3.5.4.5","KEGG:00983+3.5.4.5","MetaCyc:PWY-6556","MetaCyc:PWY-7181","MetaCyc:PWY-7193","MetaCyc:PWY-7199" Cytidine and deoxycytidylate deaminase zinc-binding region IPR013171
PANTHER 32 219 188 PTHR11644:SF2 none none none
SUPERFAMILY 51 202 152 SSF53927 none none IPR016193
PANTHER 32 219 188 PTHR11644 none none none
ProSiteProfiles 103 223 121 PS51747 none Cytidine and deoxycytidylate deaminases domain profile. IPR002125

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting