Protein : Qrob_P0517720.2 Q. robur
Protein Identifier  ? Qrob_P0517720.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=3) K00281 - glycine dehydrogenase [EC:1.4.4.2] Code Enzyme  EC:1.4.4.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1080  
Kegg Orthology  K00281
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006546 glycine catabolic process The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid.
GO:0004375 glycine dehydrogenase (decarboxylating) activity Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2.
GO:0006544 glycine metabolic process The chemical reactions and pathways involving glycine, aminoethanoic acid.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266280 1 1068 + 1068 Gaps:34 98.85 1046 86.75 0.0 glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_kegg lcl|mdm:103455829 1 1079 + 1079 Gaps:52 100.00 1049 85.03 0.0 glycine dehydrogenase (decarboxylating) mitochondrial
blastp_kegg lcl|tcc:TCM_037284 1 1079 + 1079 Gaps:39 100.00 1050 84.76 0.0 Glycine decarboxylase P-protein 1
blastp_kegg lcl|pxb:103952059 1 1079 + 1079 Gaps:52 100.00 1049 84.75 0.0 glycine dehydrogenase (decarboxylating) mitochondrial (EC:1.4.4.2)
blastp_kegg lcl|fve:101308733 1 1079 + 1079 Gaps:43 100.00 1048 84.06 0.0 glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_kegg lcl|vvi:100266170 1 1079 + 1079 Gaps:40 100.00 1043 84.76 0.0 glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_kegg lcl|sly:101260070 1 1078 + 1078 Gaps:44 100.00 1036 84.27 0.0 glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_kegg lcl|cam:101506313 1 1079 + 1079 Gaps:41 94.97 1114 82.51 0.0 gdcp glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_kegg lcl|pmum:103320553 1 1079 + 1079 Gaps:43 100.00 1054 85.01 0.0 glycine dehydrogenase (decarboxylating) mitochondrial
blastp_kegg lcl|sot:102601213 1 1074 + 1074 Gaps:45 94.41 1092 84.48 0.0 gdcsP glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_pdb 1wyv_H 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyv_F 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyv_D 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyv_B 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyu_H 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyu_F 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyu_D 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyu_B 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyt_D 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_pdb 1wyt_B 563 986 + 424 Gaps:33 86.71 474 40.15 8e-69 mol:protein length:474 glycine dehydrogenase subunit 2 (P-protein)
blastp_uniprot_sprot sp|O49954|GCSP_SOLTU 1 1078 + 1078 Gaps:45 100.00 1035 84.44 0.0 Glycine dehydrogenase (decarboxylating) mitochondrial OS Solanum tuberosum GN GDCSP PE 2 SV 1
blastp_uniprot_sprot sp|P49361|GCSPA_FLAPR 1 1079 + 1079 Gaps:42 100.00 1037 83.80 0.0 Glycine dehydrogenase (decarboxylating) A mitochondrial OS Flaveria pringlei GN GDCSPA PE 2 SV 1
blastp_uniprot_sprot sp|P49362|GCSPB_FLAPR 1 1079 + 1079 Gaps:45 100.00 1034 83.85 0.0 Glycine dehydrogenase (decarboxylating) B mitochondrial OS Flaveria pringlei GN GDCSPB PE 3 SV 1
blastp_uniprot_sprot sp|O49852|GCSP_FLATR 1 1079 + 1079 Gaps:45 100.00 1034 83.75 0.0 Glycine dehydrogenase (decarboxylating) mitochondrial OS Flaveria trinervia GN GDCSPA PE 3 SV 1
blastp_uniprot_sprot sp|O49850|GCSP_FLAAN 1 1079 + 1079 Gaps:45 100.00 1034 83.66 0.0 Glycine dehydrogenase (decarboxylating) mitochondrial OS Flaveria anomala GN GDCSP PE 3 SV 1
blastp_uniprot_sprot sp|O80988|GCSP2_ARATH 1 1078 + 1078 Gaps:39 99.71 1044 82.61 0.0 Glycine dehydrogenase (decarboxylating) 2 mitochondrial OS Arabidopsis thaliana GN GLDP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q94B78|GCSP1_ARATH 1 1078 + 1078 Gaps:44 99.71 1037 82.69 0.0 Glycine dehydrogenase (decarboxylating) 1 mitochondrial OS Arabidopsis thaliana GN GLDP1 PE 1 SV 2
blastp_uniprot_sprot sp|P26969|GCSP_PEA 1 1079 + 1079 Gaps:44 100.00 1057 81.65 0.0 Glycine dehydrogenase (decarboxylating) mitochondrial OS Pisum sativum GN GDCSP PE 1 SV 1
blastp_uniprot_sprot sp|B2J427|GCSP_NOSP7 87 1065 + 979 Gaps:45 96.83 979 59.92 0.0 Glycine dehydrogenase (decarboxylating) OS Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN gcvP PE 3 SV 1
blastp_uniprot_sprot sp|Q3M9G1|GCSP_ANAVT 86 1065 + 980 Gaps:47 96.20 974 60.62 0.0 Glycine dehydrogenase (decarboxylating) OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN gcvP PE 3 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 74 493 420 PTHR11773 "KEGG:00260+1.4.4.2";signature_desc=GLYCINE DEHYDROGENASE none IPR020581
PANTHER 525 1079 555 PTHR11773 "KEGG:00260+1.4.4.2";signature_desc=GLYCINE DEHYDROGENASE none IPR020581
TIGRFAM 527 1063 537 TIGR00461 "KEGG:00260+1.4.4.2" gcvP: glycine dehydrogenase IPR003437
Gene3D 610 851 242 G3DSA:3.40.640.10 none none IPR015421
Gene3D 168 394 227 G3DSA:3.40.640.10 none none IPR015421
Phobius 519 1079 561 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 90 504 415 PF02347 "KEGG:00260+1.4.4.2" Glycine cleavage system P-protein IPR020580
Pfam 566 841 276 PF02347 "KEGG:00260+1.4.4.2" Glycine cleavage system P-protein IPR020580
Coils 738 759 22 Coil none none none
Phobius 497 518 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Hamap 82 1070 989 MF_00711 "KEGG:00260+1.4.4.2" Glycine dehydrogenase (decarboxylating) [gcvP]. IPR003437
SUPERFAMILY 525 548 24 SSF53383 none none IPR015424
SUPERFAMILY 91 498 408 SSF53383 none none IPR015424
SUPERFAMILY 1043 1064 22 SSF53383 none none IPR015424
SUPERFAMILY 579 1000 422 SSF53383 none none IPR015424
Phobius 1 496 496 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting