Protein : Qrob_P0514210.2 Q. robur
Protein Identifier  ? Qrob_P0514210.2 Organism . Name  Quercus robur
Score  4.0 Score Type  egn
Protein Description  (M=1) PTHR11070:SF7 - DNA HELICASE II (PTHR11070:SF7) Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 318  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO:0004003 ATP-dependent DNA helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1502610 1 317 + 317 Gaps:36 25.99 1089 75.27 6e-138 ATP-dependent DNA helicase pcrA putative
blastp_kegg lcl|cit:102624147 1 317 + 317 Gaps:39 24.48 1144 74.64 8e-135 ATP-dependent DNA helicase srs2-like
blastp_kegg lcl|cic:CICLE_v10033740mg 1 317 + 317 Gaps:39 24.48 1144 74.29 2e-134 hypothetical protein
blastp_kegg lcl|pmum:103333110 1 317 + 317 Gaps:36 25.31 1118 73.85 2e-133 ATP-dependent DNA helicase srs2
blastp_kegg lcl|pper:PRUPE_ppa000520mg 1 317 + 317 Gaps:36 25.36 1116 73.85 4e-133 hypothetical protein
blastp_kegg lcl|vvi:100242461 1 317 + 317 Gaps:36 25.43 1113 72.79 6e-132 ATP-dependent DNA helicase pcrA-like
blastp_kegg lcl|tcc:TCM_014815 1 317 + 317 Gaps:36 24.78 1142 71.73 2e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1
blastp_kegg lcl|mtr:MTR_1g072820 1 317 + 317 Gaps:38 84.07 339 70.18 5e-129 ATP-dependent DNA helicase pcrA
blastp_kegg lcl|pvu:PHAVU_007G133400g 1 317 + 317 Gaps:38 62.91 453 67.72 9e-129 hypothetical protein
blastp_kegg lcl|mdm:103420760 1 317 + 317 Gaps:38 31.06 911 72.44 7e-128 ATP-dependent DNA helicase srs2-like
blastp_uniprot_sprot sp|P0A5A3|UVRD1_MYCTU 19 98 + 80 Gaps:7 11.02 771 43.53 1e-07 ATP-dependent DNA helicase UvrD1 OS Mycobacterium tuberculosis GN uvrD1 PE 1 SV 1
blastp_uniprot_sprot sp|P0A5A4|UVRD1_MYCBO 19 98 + 80 Gaps:7 11.02 771 43.53 1e-07 ATP-dependent DNA helicase UvrD1 OS Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN uvrD1 PE 3 SV 1
blastp_uniprot_sprot sp|P45612|UVRD_MYCCT 24 99 + 76 Gaps:3 10.94 722 39.24 4e-06 Probable DNA helicase II homolog OS Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN uvrD PE 3 SV 2
blastp_uniprot_sprot sp|Q9CD72|UVRD1_MYCLE 26 89 + 64 Gaps:3 8.61 778 41.79 4e-06 ATP-dependent DNA helicase UvrD1 OS Mycobacterium leprae (strain TN) GN uvrD PE 3 SV 1
rpsblast_cdd gnl|CDD|162191 26 93 + 68 Gaps:7 9.23 726 49.25 8e-13 TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
rpsblast_cdd gnl|CDD|183307 21 96 + 76 Gaps:12 11.65 721 35.71 2e-10 PRK11773 uvrD DNA-dependent helicase II Provisional.
rpsblast_cdd gnl|CDD|30559 20 80 + 61 Gaps:3 9.77 655 39.06 3e-10 COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|130147 21 89 + 69 Gaps:6 9.65 715 36.23 2e-08 TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
rpsblast_cdd gnl|CDD|205540 20 49 + 30 none 8.77 342 53.33 9e-08 pfam13361 UvrD_C UvrD-like helicase C-terminal domain. This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.
rpsblast_cdd gnl|CDD|130146 21 68 + 48 Gaps:4 7.53 664 44.00 1e-07 TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
rpsblast_kog gnl|CDD|37319 1 229 + 229 Gaps:57 20.40 853 21.26 1e-11 KOG2108 KOG2108 KOG2108 3'-5' DNA helicase [Replication recombination and repair].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 22 73 52 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 20 77 58 SSF52540 none none IPR027417
PANTHER 20 80 61 PTHR11070 none none IPR000212
Pfam 19 49 31 PF13361 none UvrD-like helicase C-terminal domain IPR014017
PANTHER 20 80 61 PTHR11070:SF7 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting