Protein : Qrob_P0514030.2 Q. robur
Protein Identifier  ? Qrob_P0514030.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PF00005//PF00664//PF02705 - ABC transporter // ABC transporter transmembrane region // K+ potassium transporter Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1436  
Kegg Orthology  K05658
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO:0015079 potassium ion transmembrane transporter activity Enables the transfer of potassium ions (K+) from one side of a membrane to the other.
GO:0071805 potassium ion transmembrane transport A process in which a potassium ion is transported from one side of a membrane to the other.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004938 309 1435 + 1127 Gaps:183 100.00 1292 62.85 0.0 ATP binding cassette subfamily B4 isoform 1
blastp_kegg lcl|rcu:RCOM_1343590 309 1435 + 1127 Gaps:160 100.00 1269 63.44 0.0 multidrug resistance protein 1 2 putative (EC:3.6.3.27 3.6.3.44)
blastp_kegg lcl|pxb:103953074 322 1434 + 1113 Gaps:176 98.84 1296 62.53 0.0 ABC transporter B family member 11
blastp_kegg lcl|fve:101311221 309 1435 + 1127 Gaps:170 100.00 1283 63.06 0.0 ABC transporter B family member 4-like
blastp_kegg lcl|pop:POPTR_0014s10880g 309 1435 + 1127 Gaps:177 100.00 1294 61.98 0.0 POPTRDRAFT_834831 hypothetical protein
blastp_kegg lcl|pxb:103933553 322 1435 + 1114 Gaps:177 98.92 1295 61.12 0.0 ABC transporter B family member 11
blastp_kegg lcl|mdm:103405966 322 1435 + 1114 Gaps:177 98.92 1295 60.89 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|pper:PRUPE_ppa000313mg 317 1435 + 1119 Gaps:179 99.15 1295 62.46 0.0 hypothetical protein
blastp_kegg lcl|pmum:103327260 317 1434 + 1118 Gaps:185 99.23 1297 62.47 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|gmx:100777909 316 1434 + 1119 Gaps:170 99.61 1282 62.33 0.0 ABC transporter B family member 21-like
blastp_pdb 3g5u_B 392 1433 + 1042 Gaps:222 91.51 1284 47.23 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 392 1433 + 1042 Gaps:222 91.51 1284 47.23 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_B 392 1433 + 1042 Gaps:222 91.51 1284 47.15 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 392 1433 + 1042 Gaps:222 91.51 1284 47.15 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 392 1433 + 1042 Gaps:222 91.51 1284 47.15 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 392 1433 + 1042 Gaps:222 91.51 1284 47.15 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 2yl4_A 405 1435 + 1031 Gaps:108 85.38 595 49.21 1e-85 mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 4aa3_A 405 1426 + 1022 Gaps:108 81.10 619 49.40 4e-84 mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3b5w_H 411 1425 + 1015 Gaps:114 84.71 582 44.22 7e-65 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_pdb 3b5w_G 411 1425 + 1015 Gaps:114 84.71 582 44.22 7e-65 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_uniprot_sprot sp|O80725|AB4B_ARATH 309 1434 + 1126 Gaps:166 100.00 1286 57.31 0.0 ABC transporter B family member 4 OS Arabidopsis thaliana GN ABCB4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M1Q9|AB21B_ARATH 329 1434 + 1106 Gaps:198 98.77 1296 57.73 0.0 ABC transporter B family member 21 OS Arabidopsis thaliana GN ABCB21 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FWX7|AB11B_ARATH 352 1433 + 1082 Gaps:195 96.95 1278 58.51 0.0 ABC transporter B family member 11 OS Arabidopsis thaliana GN ABCB11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FWX8|AB12B_ARATH 345 1433 + 1089 Gaps:175 98.51 1273 56.14 0.0 ABC transporter B family member 12 OS Arabidopsis thaliana GN ABCB12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SYI3|AB5B_ARATH 348 1433 + 1086 Gaps:157 99.43 1230 56.99 0.0 ABC transporter B family member 5 OS Arabidopsis thaliana GN ABCB5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SYI2|AB3B_ARATH 348 1434 + 1087 Gaps:167 99.92 1229 56.43 0.0 ABC transporter B family member 3 OS Arabidopsis thaliana GN ABCB3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FHF1|AB7B_ARATH 354 1433 + 1080 Gaps:151 98.64 1248 49.15 0.0 ABC transporter B family member 7 OS Arabidopsis thaliana GN ABCB7 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LPK2|AB2B_ARATH 344 1433 + 1090 Gaps:263 95.84 1273 50.41 0.0 ABC transporter B family member 2 OS Arabidopsis thaliana GN ABCB2 PE 1 SV 3
blastp_uniprot_sprot sp|Q9SGY1|AB10B_ARATH 348 1433 + 1086 Gaps:261 98.37 1227 49.71 0.0 ABC transporter B family member 10 OS Arabidopsis thaliana GN ABCB10 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LJX0|AB19B_ARATH 348 1434 + 1087 Gaps:198 98.40 1252 44.72 0.0 ABC transporter B family member 19 OS Arabidopsis thaliana GN ABCB19 PE 1 SV 1

53 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 368 392 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 31 56 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 92 114 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 722 736 15 PS00211 none ABC transporters family signature. IPR017871
SUPERFAMILY 913 1188 276 SSF90123 none none IPR011527
ProSiteProfiles 1210 1427 218 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
SMART 1237 1404 168 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SMART 612 802 191 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 457 481 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 1330 1344 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 482 540 59 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 223 243 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 646 1431 786 PTHR24221 none none none
Pfam 605 750 146 PF00005 none ABC transporter IPR003439
Pfam 1229 1358 130 PF00005 none ABC transporter IPR003439
Pfam 19 305 287 PF02705 none K+ potassium transporter IPR003855
PANTHER 646 1431 786 PTHR24221:SF138 none none none
SUPERFAMILY 1199 1427 229 SSF52540 none none IPR027417
Phobius 927 937 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 402 584 183 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Phobius 188 198 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 244 367 124 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 199 217 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 57 67 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1111 1134 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 955 1022 68 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 541 562 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 141 162 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 358 581 224 SSF90123 none none IPR011527
Phobius 1135 1435 301 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

13 Localization

Analysis Start End Length
TMHMM 68 87 19
TMHMM 1111 1133 22
TMHMM 368 390 22
TMHMM 228 250 22
TMHMM 939 961 22
TMHMM 97 114 17
TMHMM 199 218 19
TMHMM 33 55 22
TMHMM 538 560 22
TMHMM 169 186 17
TMHMM 459 481 22
TMHMM 140 159 19
TMHMM 1030 1052 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting