Protein : Qrob_P0513990.2 Q. robur
Protein Identifier  ? Qrob_P0513990.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=34) K15032 - mTERF domain-containing protein, mitochondrial Gene Prediction Quality  validated
Protein length 

Sequence

Length: 368  
Kegg Orthology  K15032
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100240766 1 364 + 364 Gaps:20 98.44 384 48.94 8e-110 uncharacterized LOC100240766
blastp_kegg lcl|vvi:100256384 44 367 + 324 Gaps:15 85.61 396 49.56 3e-108 uncharacterized LOC100256384
blastp_kegg lcl|vvi:100252802 37 365 + 329 Gaps:15 86.22 399 50.00 1e-106 uncharacterized LOC100252802
blastp_kegg lcl|vvi:100251002 44 365 + 322 Gaps:15 84.89 397 51.04 7e-106 uncharacterized LOC100251002
blastp_kegg lcl|vvi:100245862 25 362 + 338 Gaps:17 88.09 403 48.45 4e-104 uncharacterized LOC100245862
blastp_kegg lcl|vvi:100257952 45 364 + 320 Gaps:15 86.12 389 48.66 1e-101 uncharacterized LOC100257952
blastp_kegg lcl|rcu:RCOM_0089610 12 364 + 353 Gaps:25 82.09 441 45.58 3e-101 hypothetical protein
blastp_kegg lcl|tcc:TCM_021170 32 364 + 333 Gaps:18 68.43 510 46.70 4e-97 Mitochondrial transcription termination factor family protein putative
blastp_kegg lcl|cit:102628676 38 364 + 327 Gaps:18 86.33 395 46.33 8e-97 uncharacterized LOC102628676
blastp_kegg lcl|rcu:RCOM_1451930 1 365 + 365 Gaps:38 67.61 1025 46.46 9e-97 hypothetical protein
rpsblast_cdd gnl|CDD|202273 80 325 + 246 Gaps:43 95.07 345 31.71 6e-15 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_kog gnl|CDD|36481 28 358 + 331 Gaps:20 84.50 413 20.06 4e-25 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 289 323 35 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 167 198 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 131 162 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 95 126 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 257 288 32 SM00733 none Mitochondrial termination factor repeats IPR003690
PANTHER 43 364 322 PTHR13068 none none none
Pfam 83 275 193 PF02536 none mTERF IPR003690
Pfam 250 321 72 PF02536 none mTERF IPR003690
PANTHER 43 364 322 PTHR13068:SF15 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting