Protein : Qrob_P0513950.2 Q. robur
Protein Identifier  ? Qrob_P0513950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=34) K15032 - mTERF domain-containing protein, mitochondrial Gene Prediction Quality  validated
Protein length 

Sequence

Length: 380  
Kegg Orthology  K15032
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100256384 1 379 + 379 Gaps:2 96.21 396 49.61 1e-126 uncharacterized LOC100256384
blastp_kegg lcl|vvi:100240766 1 379 + 379 Gaps:5 97.40 384 51.07 7e-123 uncharacterized LOC100240766
blastp_kegg lcl|vvi:100252802 1 379 + 379 Gaps:2 94.49 399 51.19 9e-123 uncharacterized LOC100252802
blastp_kegg lcl|vvi:100245862 42 379 + 338 none 83.87 403 53.25 2e-122 uncharacterized LOC100245862
blastp_kegg lcl|vvi:100251002 48 379 + 332 none 83.63 397 53.01 3e-120 uncharacterized LOC100251002
blastp_kegg lcl|vvi:100257952 5 379 + 375 Gaps:4 96.92 389 49.34 1e-119 uncharacterized LOC100257952
blastp_kegg lcl|tcc:TCM_046783 1 379 + 379 Gaps:14 94.16 394 48.52 6e-115 Mitochondrial transcription termination factor family protein putative
blastp_kegg lcl|tcc:TCM_021173 1 379 + 379 Gaps:4 95.95 395 47.76 7e-115 Mitochondrial transcription termination factor family protein putative isoform 1
blastp_kegg lcl|tcc:TCM_021170 15 379 + 365 Gaps:10 73.14 510 47.72 7e-113 Mitochondrial transcription termination factor family protein putative
blastp_kegg lcl|tcc:TCM_021172 15 379 + 365 Gaps:9 96.62 385 47.58 3e-112 Mitochondrial transcription termination factor family protein putative isoform 1
rpsblast_cdd gnl|CDD|202273 84 361 + 278 Gaps:9 99.13 345 33.04 6e-21 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_kog gnl|CDD|36481 1 341 + 341 Gaps:56 99.52 413 32.12 4e-31 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 135 166 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 276 307 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 241 271 31 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 308 342 35 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 207 237 31 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 171 202 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 99 130 32 SM00733 none Mitochondrial termination factor repeats IPR003690
PANTHER 47 378 332 PTHR13068 none none none
PANTHER 47 378 332 PTHR13068:SF15 none none none
Pfam 87 269 183 PF02536 none mTERF IPR003690
Pfam 254 361 108 PF02536 none mTERF IPR003690

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting