Protein : Qrob_P0513890.2 Q. robur
Protein Identifier  ? Qrob_P0513890.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=22) PTHR13068//PTHR13068:SF15 - CGI-12 PROTEIN-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 174  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0089610 77 171 + 95 none 21.54 441 55.79 2e-25 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s01310g 1 170 + 170 Gaps:10 42.97 391 39.88 6e-25 POPTRDRAFT_555293 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s01290g 1 170 + 170 Gaps:13 43.40 394 40.94 3e-24 POPTRDRAFT_555297 hypothetical protein
blastp_kegg lcl|tcc:TCM_046782 1 169 + 169 Gaps:12 44.36 399 37.85 1e-23 Mitochondrial transcription termination factor family protein putative isoform 1
blastp_kegg lcl|tcc:TCM_046783 1 169 + 169 Gaps:14 40.36 394 40.88 1e-23 Mitochondrial transcription termination factor family protein putative
blastp_kegg lcl|tcc:TCM_021173 1 169 + 169 Gaps:4 42.28 395 39.52 7e-23 Mitochondrial transcription termination factor family protein putative isoform 1
blastp_kegg lcl|vvi:100252802 76 169 + 94 none 23.56 399 53.19 1e-22 uncharacterized LOC100252802
blastp_kegg lcl|vvi:100256384 77 169 + 93 none 23.48 396 49.46 2e-22 uncharacterized LOC100256384
blastp_kegg lcl|tcc:TCM_021176 1 171 + 171 Gaps:20 44.19 396 37.71 3e-22 Mitochondrial transcription termination factor family protein putative isoform 1
blastp_kegg lcl|vvi:100240766 77 169 + 93 none 24.22 384 49.46 4e-22 uncharacterized LOC100240766
rpsblast_cdd gnl|CDD|202273 88 165 + 78 none 22.61 345 30.77 7e-08 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 90 171 82 PTHR13068 none none none
SMART 137 168 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 101 132 32 SM00733 none Mitochondrial termination factor repeats IPR003690
Pfam 89 168 80 PF02536 none mTERF IPR003690
PANTHER 90 171 82 PTHR13068:SF15 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting