Protein : Qrob_P0504960.2 Q. robur
Protein Identifier  ? Qrob_P0504960.2 Organism . Name  Quercus robur
Score  53.2 Score Type  egn
Protein Description  (M=1) PTHR15601 - STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN (SERP1/RAMP4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 134  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103452160 21 133 + 113 Gaps:45 100.00 68 89.71 6e-27 stress-associated endoplasmic reticulum protein 2-like
blastp_kegg lcl|fve:101312406 22 133 + 112 Gaps:45 94.37 71 91.04 8e-27 stress-associated endoplasmic reticulum protein 2-like isoform 1
blastp_kegg lcl|pmum:103322082 21 133 + 113 Gaps:45 100.00 68 88.24 2e-26 stress-associated endoplasmic reticulum protein 2
blastp_kegg lcl|sly:101246823 1 77 + 77 Gaps:4 78.49 93 73.97 3e-26 stress-associated endoplasmic reticulum protein 2-like
blastp_kegg lcl|pxb:103935127 20 133 + 114 Gaps:45 46.00 150 88.41 4e-26 uncharacterized LOC103935127
blastp_kegg lcl|pxb:103961449 21 133 + 113 Gaps:45 100.00 68 88.24 7e-26 stress-associated endoplasmic reticulum protein 2
blastp_kegg lcl|mdm:103416585 21 133 + 113 Gaps:45 100.00 68 86.76 1e-25 stress-associated endoplasmic reticulum protein 2-like
blastp_kegg lcl|rcu:RCOM_1079850 21 133 + 113 Gaps:45 100.00 68 88.24 1e-25 stress associated endoplasmic reticulum protein putative
blastp_kegg lcl|pper:PRUPE_ppa014280mg 22 74 + 53 none 69.74 76 88.68 2e-25 hypothetical protein
blastp_kegg lcl|tcc:TCM_008766 21 133 + 113 Gaps:45 100.00 68 86.76 4e-25 Ribosome associated membrane protein RAMP4
rpsblast_cdd gnl|CDD|191569 31 73 + 43 none 68.25 63 60.47 2e-12 pfam06624 RAMP4 Ribosome associated membrane protein RAMP4. This family consists of several ribosome associated membrane protein RAMP4 (or SERP1) sequences. Stabilisation of membrane proteins in response to stress involves the concerted action of a rescue unit in the ER membrane comprised of SERP1/RAMP4 other components of the translocon and molecular chaperones in the ER.
rpsblast_kog gnl|CDD|38701 22 73 + 52 none 80.00 65 61.54 6e-15 KOG3491 KOG3491 KOG3491 Predicted membrane protein [Function unknown].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 19 55 37 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 79 84 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 125 133 9 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 23 73 51 PTHR15601:SF0 none none none
Pfam 27 74 48 PF06624 none Ribosome associated membrane protein RAMP4 IPR010580
Phobius 56 78 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 3 13 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 102 106 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 85 101 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 107 124 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 23 73 51 PTHR15601 none none IPR010580
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

2 Localization

Analysis Start End Length
TMHMM 99 121 22
TMHMM 57 79 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting