Protein : Qrob_P0504600.2 Q. robur
Protein Identifier  ? Qrob_P0504600.2 Organism . Name  Quercus robur
Score  92.0 Score Type  egn
Protein Description  (M=1) K02606 - origin recognition complex subunit 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 436  
Kegg Orthology  K02606
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0000808 origin recognition complex A multisubunit complex that is located at the replication origins of a chromosome.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10015376mg 1 434 + 434 Gaps:63 98.09 419 81.02 0.0 hypothetical protein
blastp_kegg lcl|cit:102619263 1 434 + 434 Gaps:64 98.09 418 81.22 0.0 origin recognition complex subunit 4-like
blastp_kegg lcl|pop:POPTR_0008s12520g 1 435 + 435 Gaps:63 95.13 431 77.80 0.0 POPTRDRAFT_873928 origin recognition complex subunit 4 family protein
blastp_kegg lcl|vvi:100249124 2 434 + 433 Gaps:63 97.61 418 78.19 0.0 origin recognition complex subunit 4-like
blastp_kegg lcl|pper:PRUPE_ppa006384mg 1 435 + 435 Gaps:62 99.28 414 78.10 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341674 1 434 + 434 Gaps:63 97.61 419 77.75 0.0 origin recognition complex subunit 4
blastp_kegg lcl|tcc:TCM_024253 1 434 + 434 Gaps:68 98.10 420 76.70 0.0 Origin recognition complex subunit 4 isoform 1
blastp_kegg lcl|pxb:103948189 1 434 + 434 Gaps:63 97.61 419 76.77 0.0 origin recognition complex subunit 4
blastp_kegg lcl|mdm:103402637 1 434 + 434 Gaps:63 97.61 419 76.53 0.0 origin recognition complex subunit 4
blastp_kegg lcl|fve:101301778 1 434 + 434 Gaps:63 97.61 419 76.04 0.0 origin recognition complex subunit 4-like
blastp_uniprot_sprot sp|Q2YDI2|ORC4_BOVIN 7 434 + 428 Gaps:95 93.35 436 30.47 4e-37 Origin recognition complex subunit 4 OS Bos taurus GN ORC4 PE 2 SV 1
blastp_uniprot_sprot sp|Q4U3P8|ORC4_CRIGR 13 434 + 422 Gaps:93 91.97 436 29.93 1e-36 Origin recognition complex subunit 4 OS Cricetulus griseus GN ORC4 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R6Z7|ORC4_PONAB 13 434 + 422 Gaps:93 91.97 436 29.68 6e-36 Origin recognition complex subunit 4 OS Pongo abelii GN ORC4 PE 2 SV 1
blastp_uniprot_sprot sp|O43929|ORC4_HUMAN 13 434 + 422 Gaps:93 91.97 436 29.93 7e-36 Origin recognition complex subunit 4 OS Homo sapiens GN ORC4 PE 1 SV 2
blastp_uniprot_sprot sp|O93479|ORC4_XENLA 33 434 + 402 Gaps:69 88.66 432 30.03 6e-35 Origin recognition complex subunit 4 OS Xenopus laevis GN orc4 PE 2 SV 1
blastp_uniprot_sprot sp|O88708|ORC4_MOUSE 13 434 + 422 Gaps:92 92.38 433 29.25 2e-34 Origin recognition complex subunit 4 OS Mus musculus GN Orc4 PE 1 SV 2
blastp_uniprot_sprot sp|Q6P9Z8|ORC4_RAT 13 434 + 422 Gaps:93 92.40 434 29.43 2e-34 Origin recognition complex subunit 4 OS Rattus norvegicus GN Orc4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y794|ORC4_SCHPO 16 202 + 187 Gaps:38 22.53 972 33.79 1e-21 Origin recognition complex subunit 4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN orc4 PE 1 SV 1
blastp_uniprot_sprot sp|P54791|ORC4_YEAST 42 230 + 189 Gaps:52 44.05 529 26.61 7e-10 Origin recognition complex subunit 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN ORC4 PE 1 SV 1
blastp_uniprot_sprot sp|Q86AD6|ORC4_DICDI 56 233 + 178 Gaps:34 47.73 440 24.29 3e-09 Origin recognition complex subunit 4 OS Dictyostelium discoideum GN orcD PE 3 SV 1
rpsblast_cdd gnl|CDD|31663 33 194 + 162 Gaps:17 47.27 366 22.54 3e-11 COG1474 CDC6 Cdc6-related protein AAA superfamily ATPase [DNA replication recombination and repair / Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|37439 14 433 + 420 Gaps:85 93.87 408 33.94 3e-47 KOG2228 KOG2228 KOG2228 Origin recognition complex subunit 4 [Replication recombination and repair].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 352 435 84 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 292 292 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 4 288 285 PTHR12087:SF0 none none none
Phobius 329 351 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 55 182 128 PF00004 none ATPase family associated with various cellular activities (AAA) IPR003959
PANTHER 4 288 285 PTHR12087 none none none
PIRSF 3 435 433 PIRSF007858 none none IPR016527
Gene3D 39 188 150 G3DSA:3.40.50.300 none none IPR027417
PANTHER 306 434 129 PTHR12087 none none none
Phobius 293 317 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 2 17 16 SSF52540 none none IPR027417
SUPERFAMILY 51 236 186 SSF52540 none none IPR027417
Phobius 318 328 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 306 434 129 PTHR12087:SF0 none none none
Pfam 196 428 233 PF14629 none Origin recognition complex (ORC) subunit 4 C-terminus none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting