Protein : Qrob_P0504000.2 Q. robur
Protein Identifier  ? Qrob_P0504000.2 Organism . Name  Quercus robur
Score  46.0 Score Type  egn
Protein Description  (M=2) PTHR12066 - TELOMERASE REVERSE TRANSCRIPTASE Code Enzyme  EC:2.7.7.49
Gene Prediction Quality  validated Protein length 

Sequence

Length: 273  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003964 RNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa015223mg 112 256 + 145 Gaps:29 19.71 883 50.00 6e-42 hypothetical protein
blastp_kegg lcl|cit:102625932 85 258 + 174 Gaps:30 15.84 1275 44.06 1e-40 telomerase reverse transcriptase-like
blastp_kegg lcl|pmum:103330484 117 256 + 140 Gaps:29 13.16 1284 49.11 2e-40 telomerase reverse transcriptase
blastp_kegg lcl|gmx:100790649 86 258 + 173 Gaps:33 16.39 1257 44.66 5e-39 telomerase reverse transcriptase-like
blastp_kegg lcl|pxb:103945875 105 258 + 154 Gaps:29 14.81 1236 43.17 9e-39 telomerase reverse transcriptase
blastp_kegg lcl|pvu:PHAVU_005G021500g 69 258 + 190 Gaps:33 17.95 1242 39.91 1e-38 hypothetical protein
blastp_kegg lcl|mdm:103438500 105 258 + 154 Gaps:29 15.14 1209 43.17 3e-38 telomerase reverse transcriptase
blastp_kegg lcl|tcc:TCM_044678 68 258 + 191 Gaps:41 19.91 1165 38.79 3e-37 Telomerase reverse transcriptase putative isoform 1
blastp_kegg lcl|cic:CICLE_v10030541mg 24 258 + 235 Gaps:38 21.16 1205 38.82 2e-36 hypothetical protein
blastp_kegg lcl|gmx:100776816 69 258 + 190 Gaps:32 19.49 1108 40.28 1e-35 telomerase reverse transcriptase-like
blastp_uniprot_sprot sp|Q9SPU7|TERT_ARATH 74 258 + 185 Gaps:17 17.81 1123 32.00 4e-17 Telomerase reverse transcriptase OS Arabidopsis thaliana GN TERT PE 1 SV 1
blastp_uniprot_sprot sp|Q8LKW0|TERT_ORYSJ 77 255 + 179 Gaps:26 15.17 1259 32.98 9e-17 Telomerase reverse transcriptase OS Oryza sativa subsp. japonica GN TERT PE 2 SV 2
blastp_uniprot_sprot sp|O14746|TERT_HUMAN 105 239 + 135 Gaps:19 12.72 1132 33.33 5e-08 Telomerase reverse transcriptase OS Homo sapiens GN TERT PE 1 SV 1
blastp_uniprot_sprot sp|Q673L6|TERT_RAT 122 239 + 118 Gaps:7 11.11 1125 31.20 2e-06 Telomerase reverse transcriptase OS Rattus norvegicus GN Tert PE 2 SV 1
rpsblast_cdd gnl|CDD|192913 121 249 + 129 Gaps:21 100.00 136 30.15 2e-19 pfam12009 Telomerase_RBD Telomerase ribonucleoprotein complex - RNA binding domain. Telomeres in most organisms are comprised of tandem simple sequence repeats. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition. One major influence on telomere length is the enzyme telomerase. It is a reverse transcriptase that adds these simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. The RNA binding domain of telomerase - TRBD - is made up of twelve alpha helices and two short beta sheets. How telomerase and associated regulatory factors physically interact and function with each other to maintain appropriate telomere length is poorly understood. It is known however that TRBD is involved in formation of the holoenzyme (which performs the telomere extension) in addition to recognition and binding of RNA.
rpsblast_cdd gnl|CDD|198043 122 249 + 128 Gaps:8 100.00 136 28.68 1e-15 smart00975 Telomerase_RBD Telomerase ribonucleoprotein complex - RNA binding domain. Telomeres in most organisms are comprised of tandem simple sequence repeats. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition. One major influence on telomere length is the enzyme telomerase. It is a reverse transcriptase that adds these simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. The RNA binding domain of telomerase - TRBD - is made up of twelve alpha helices and two short beta sheets. How telomerase and associated regulatory factors physically interact and function with each other to maintain appropriate telomere length is poorly understood. It is known however that TRBD is involved in formation of the holoenzyme (which performs the telomere extension) in addition to recognition and binding of RNA.
rpsblast_kog gnl|CDD|36223 103 272 + 170 Gaps:16 19.37 888 23.26 2e-13 KOG1005 KOG1005 KOG1005 Telomerase catalytic subunit/reverse transcriptase TERT [Replication recombination and repair Chromatin structure and dynamics].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 121 245 125 PTHR12066 none none none
Pfam 121 248 128 PF12009 none Telomerase ribonucleoprotein complex - RNA binding domain IPR021891
SMART 121 249 129 SM00975 none Telomerase ribonucleoprotein complex - RNA binding domain IPR021891
PANTHER 121 245 125 PTHR12066:SF0 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting