Protein : Qrob_P0501390.2 Q. robur
Protein Identifier  ? Qrob_P0501390.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K08903 - photosystem II 13kDa protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 180  
Kegg Orthology  K08903
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0009654 photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103334405 1 179 + 179 Gaps:3 100.00 180 80.00 9e-100 photosystem II reaction center PSB28 protein chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa012196mg 1 179 + 179 Gaps:3 100.00 180 79.44 4e-99 hypothetical protein
blastp_kegg lcl|tcc:TCM_003900 1 179 + 179 Gaps:4 100.00 181 81.77 5e-99 Photosystem II reaction center PSB28 protein isoform 1
blastp_kegg lcl|gmx:100306491 1 179 + 179 Gaps:4 100.00 179 79.89 2e-97 uncharacterized LOC100306491
blastp_kegg lcl|mdm:103419903 1 179 + 179 Gaps:3 100.00 180 76.67 2e-94 photosystem II reaction center PSB28 protein chloroplastic-like
blastp_kegg lcl|mdm:103435763 1 179 + 179 Gaps:3 100.00 180 76.67 2e-94 photosystem II reaction center PSB28 protein chloroplastic-like
blastp_kegg lcl|vvi:100260011 1 179 + 179 Gaps:4 100.00 179 78.21 6e-94 photosystem II reaction center PSB28 protein chloroplastic-like
blastp_kegg lcl|pxb:103927965 1 178 + 178 Gaps:3 99.44 180 75.98 2e-93 photosystem II reaction center PSB28 protein chloroplastic-like
blastp_kegg lcl|pxb:103959875 1 178 + 178 Gaps:3 99.44 180 76.54 5e-93 photosystem II reaction center Psb28 protein-like
blastp_kegg lcl|gmx:100780777 1 179 + 179 Gaps:4 100.00 179 75.98 3e-92 photosystem II reaction center PSB28 protein chloroplastic-like
blastp_pdb 2kvo_A 71 178 + 108 Gaps:1 89.17 120 49.53 2e-31 mol:protein length:120 Photosystem II reaction center psb28 protein
blastp_uniprot_sprot sp|Q0JG75|PSB28_ORYSJ 2 179 + 178 Gaps:4 98.89 180 66.85 6e-78 Photosystem II reaction center PSB28 protein chloroplastic OS Oryza sativa subsp. japonica GN PSB28 PE 2 SV 2
blastp_uniprot_sprot sp|Q8W0Y8|PSB28_ARATH 1 179 + 179 Gaps:3 99.45 183 60.99 3e-74 Photosystem II reaction center PSB28 protein chloroplastic OS Arabidopsis thaliana GN PSB28 PE 2 SV 1
blastp_uniprot_sprot sp|O78418|PSB28_GUITH 71 178 + 108 Gaps:1 93.97 116 64.22 4e-45 Photosystem II reaction center Psb28 protein OS Guillardia theta GN psb28 PE 3 SV 1
blastp_uniprot_sprot sp|P49508|PSB28_ODOSI 67 178 + 112 Gaps:1 98.26 115 57.52 9e-45 Photosystem II reaction center Psb28 protein OS Odontella sinensis GN psb28 PE 3 SV 1
blastp_uniprot_sprot sp|A0T0H5|PSB28_PHATC 67 178 + 112 Gaps:1 98.26 115 57.52 1e-44 Photosystem II reaction center Psb28 protein OS Phaeodactylum tricornutum (strain CCAP 1055/1) GN psb28 PE 3 SV 1
blastp_uniprot_sprot sp|Q00UI6|PSB28_OSTTA 70 179 + 110 Gaps:2 73.47 147 62.96 1e-44 Photosystem II reaction center psb28 protein chloroplastic OS Ostreococcus tauri GN psb28 PE 3 SV 1
blastp_uniprot_sprot sp|Q1XDE0|PSB28_PYRYE 71 178 + 108 Gaps:1 94.78 115 60.55 3e-43 Photosystem II reaction center Psb28 protein OS Pyropia yezoensis GN psb28 PE 3 SV 1
blastp_uniprot_sprot sp|P51347|PSB28_PORPU 70 178 + 109 Gaps:1 95.65 115 60.00 4e-43 Photosystem II reaction center Psb28 protein OS Porphyra purpurea GN psb28 PE 3 SV 1
blastp_uniprot_sprot sp|Q5MZB9|PSB28_SYNP6 70 178 + 109 Gaps:3 96.43 112 62.04 7e-42 Photosystem II reaction center Psb28 protein OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN psb28 PE 3 SV 1
blastp_uniprot_sprot sp|Q31ML0|PSB28_SYNE7 70 178 + 109 Gaps:3 96.43 112 62.04 7e-42 Photosystem II reaction center Psb28 protein OS Synechococcus elongatus (strain PCC 7942) GN psb28 PE 3 SV 1
rpsblast_cdd gnl|CDD|177673 69 179 + 111 none 100.00 111 84.68 1e-63 PLN00039 PLN00039 photosystem II reaction center Psb28 protein Provisional.
rpsblast_cdd gnl|CDD|177050 71 179 + 109 Gaps:1 97.35 113 61.82 2e-49 CHL00128 psbW photosystem II protein W Reviewed.
rpsblast_cdd gnl|CDD|190791 71 176 + 106 Gaps:1 99.07 108 57.01 1e-47 pfam03912 Psb28 Psb28 protein. Psb28 is a 13 kDa soluble protein that is directly assembled in dimeric PSII supercomplexes. The negatively charged N-terminal region is essential for this process. This protein was formerly known as PsbW but PsbW is now reserved for pfam07123.
rpsblast_cdd gnl|CDD|211779 71 178 + 108 Gaps:1 100.00 109 56.88 3e-47 TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families apparently without homology between them have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However while members of the plant PsbW family are not found (so far) in Cyanobacteria members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family Psp28 rather than PsbW.
rpsblast_cdd gnl|CDD|184181 66 179 + 114 Gaps:1 100.00 113 54.87 1e-45 PRK13612 PRK13612 photosystem II reaction center protein Psb28 Provisional.
rpsblast_cdd gnl|CDD|106556 70 174 + 105 Gaps:8 95.19 104 49.49 7e-18 PRK13611 PRK13611 photosystem II reaction center protein Psb28 Provisional.
rpsblast_cdd gnl|CDD|139699 70 171 + 102 Gaps:1 89.38 113 29.70 3e-12 PRK13610 PRK13610 photosystem II reaction center protein Psb28 Provisional.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProDom 72 171 100 PD012692 none PHOTOSYSTEM II REACTION W CENTER PSB28 CHLOROPLAST PHOTOSYNTHESIS PLASTID CENTRE IPR005610
Pfam 71 176 106 PF03912 none Psb28 protein IPR005610
TIGRFAM 71 177 107 TIGR03047 none PS_II_psb28: photosystem II reaction center protein Psb28 IPR005610

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting