Protein : Qrob_P0490980.2 Q. robur
Protein Identifier  ? Qrob_P0490980.2 Organism . Name  Quercus robur
Score  43.1 Score Type  egn
Protein Description  (M=2) K14569 - ribosome biogenesis protein BMS1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 976  
Kegg Orthology  K14569
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335886 1 957 + 957 Gaps:65 76.77 1201 74.08 0.0 ribosome biogenesis protein BMS1 homolog
blastp_kegg lcl|pmum:103319324 1 957 + 957 Gaps:79 76.81 1203 73.16 0.0 ribosome biogenesis protein BMS1 homolog
blastp_kegg lcl|pper:PRUPE_ppa000398mg 1 957 + 957 Gaps:56 76.90 1208 72.77 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0017s04900g 1 955 + 955 Gaps:72 76.29 1181 72.81 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa000405mg 1 957 + 957 Gaps:60 76.83 1204 72.54 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10018567mg 9 955 + 947 Gaps:87 76.26 1188 72.52 0.0 hypothetical protein
blastp_kegg lcl|mdm:103439184 1 957 + 957 Gaps:84 76.90 1208 71.26 0.0 ribosome biogenesis protein BMS1 homolog
blastp_kegg lcl|pxb:103963683 1 957 + 957 Gaps:79 76.92 1209 71.08 0.0 ribosome biogenesis protein BMS1 homolog
blastp_kegg lcl|pxb:103959212 1 957 + 957 Gaps:86 76.94 1210 70.25 0.0 ribosome biogenesis protein bms1-like
blastp_kegg lcl|pxb:103959211 1 957 + 957 Gaps:86 76.94 1210 70.25 0.0 ribosome biogenesis protein bms1-like
blastp_uniprot_sprot sp|Q08965|BMS1_YEAST 9 953 + 945 Gaps:199 76.42 1183 40.71 1e-167 Ribosome biogenesis protein BMS1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN BMS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q14692|BMS1_HUMAN 12 961 + 950 Gaps:109 59.36 1282 51.77 1e-141 Ribosome biogenesis protein BMS1 homolog OS Homo sapiens GN BMS1 PE 1 SV 1
blastp_uniprot_sprot sp|O94653|BMS1_SCHPO 13 953 + 941 Gaps:110 72.61 1121 44.10 3e-131 Ribosome biogenesis protein bms1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN bms1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5VTM2|AGAP9_HUMAN 125 213 + 89 none 12.66 703 73.03 4e-35 Arf-GAP with GTPase ANK repeat and PH domain-containing protein 9 OS Homo sapiens GN AGAP9 PE 2 SV 2
blastp_uniprot_sprot sp|Q5XGY1|TSR1_XENLA 115 328 + 214 Gaps:17 24.91 815 30.05 1e-08 Pre-rRNA-processing protein TSR1 homolog OS Xenopus laevis GN tsr1 PE 2 SV 1
blastp_uniprot_sprot sp|Q19329|TSR1_CAEEL 127 321 + 195 Gaps:21 23.18 785 25.82 7e-08 Pre-rRNA-processing protein TSR1 homolog OS Caenorhabditis elegans GN tag-151 PE 3 SV 1
blastp_uniprot_sprot sp|Q54YA7|TSR1_DICDI 121 318 + 198 Gaps:24 22.03 826 26.37 2e-07 Pre-rRNA-processing protein TSR1 homolog OS Dictyostelium discoideum GN tsr1 PE 3 SV 1
blastp_uniprot_sprot sp|Q61WR2|TSR1_CAEBR 127 327 + 201 Gaps:21 24.11 788 25.26 2e-07 Pre-rRNA-processing protein TSR1 homolog OS Caenorhabditis briggsae GN tag-151 PE 3 SV 1
blastp_uniprot_sprot sp|Q5SWD9|TSR1_MOUSE 827 952 + 126 none 15.69 803 21.43 2e-06 Pre-rRNA-processing protein TSR1 homolog OS Mus musculus GN Tsr1 PE 2 SV 1
rpsblast_cdd gnl|CDD|34791 23 953 + 931 Gaps:143 76.32 1077 40.39 1e-161 COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|206669 46 276 + 231 none 100.00 231 73.16 1e-126 cd01882 BMS1 Bms1 an essential GTPase promotes assembly of preribosomal RNA processing complexes. Bms1 is an essential evolutionarily conserved nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0 A1 and A2 and the formation of 40S subunits. Bms1 the putative endonuclease Rc11 and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
rpsblast_cdd gnl|CDD|113712 781 954 + 174 Gaps:5 57.68 293 32.54 4e-39 pfam04950 DUF663 Protein of unknown function (DUF663). This family contains several uncharacterized eukaryotic proteins.
rpsblast_cdd gnl|CDD|129021 233 319 + 87 Gaps:4 100.00 83 53.01 4e-29 smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU.
rpsblast_cdd gnl|CDD|191946 233 319 + 87 Gaps:6 100.00 81 58.02 4e-28 pfam08142 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU.
rpsblast_cdd gnl|CDD|206647 87 225 + 139 Gaps:27 89.62 183 24.39 6e-14 cd00881 GTP_translation_factor GTP translation factor family primarily contains translation initiation elongation and release factors. The GTP translation factor family consists primarily of translation initiation elongation and release factors which play specific roles in protein translation. In addition the family includes Snu114p a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns TetM a tetracycline resistance gene that protects the ribosome from tetracycline binding and the unusual subfamily CysN/ATPS which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
rpsblast_kog gnl|CDD|37191 10 957 + 948 Gaps:133 84.48 754 25.75 4e-11 KOG1980 KOG1980 KOG1980 Uncharacterized conserved protein [Function unknown].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 790 954 165 PF04950 none Protein of unknown function (DUF663) IPR007034
PANTHER 794 958 165 PTHR12858 none none none
PANTHER 1 470 470 PTHR12858 none none none
SUPERFAMILY 81 220 140 SSF52540 none none IPR027417
PANTHER 1 470 470 PTHR12858:SF2 none none none
Gene3D 101 222 122 G3DSA:3.40.50.300 none none IPR027417
PANTHER 794 958 165 PTHR12858:SF2 none none none
PANTHER 511 747 237 PTHR12858:SF2 none none none
SMART 233 319 87 SM00785 none AARP2CN (NUC121) domain IPR012948
Pfam 124 223 100 PF00009 none Elongation factor Tu GTP binding domain none
Gene3D 76 100 25 G3DSA:3.40.50.300 none none IPR027417
Gene3D 890 937 48 G3DSA:3.40.50.300 none none IPR027417
PANTHER 511 747 237 PTHR12858 none none none
ProSiteProfiles 82 248 167 PS51714 none Bms1-type guanine nucleotide-binding (G) domain profile. IPR030387
Pfam 233 319 87 PF08142 none AARP2CN (NUC121) domain IPR012948

0 Localization

0 Qtllist

0 Targeting