Protein : Qrob_P0485810.2 Q. robur
Protein Identifier  ? Qrob_P0485810.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) PTHR11669//PTHR11669:SF0 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // SUBFAMILY NOT NAMED Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1196  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
GO:0009360 DNA polymerase III complex The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103324900 1 1186 + 1186 Gaps:39 97.56 1188 76.79 0.0 protein STICHEL-like 3
blastp_kegg lcl|tcc:TCM_029636 1 1186 + 1186 Gaps:67 97.62 1216 75.15 0.0 AAA-type ATPase family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000454mg 1 1186 + 1186 Gaps:62 97.51 1165 77.02 0.0 hypothetical protein
blastp_kegg lcl|gmx:100809005 1 1186 + 1186 Gaps:40 97.56 1187 74.18 0.0 protein STICHEL-like 3-like
blastp_kegg lcl|gmx:100793832 1 1186 + 1186 Gaps:36 97.57 1191 74.01 0.0 protein STICHEL-like 3-like
blastp_kegg lcl|pvu:PHAVU_006G172900g 1 1186 + 1186 Gaps:38 97.57 1193 72.59 0.0 hypothetical protein
blastp_kegg lcl|cit:102625300 1 1186 + 1186 Gaps:84 97.58 1199 74.19 0.0 protein STICHEL-like 3-like
blastp_kegg lcl|cic:CICLE_v10014075mg 1 1186 + 1186 Gaps:84 97.58 1199 74.27 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0011s06860g 1 1186 + 1186 Gaps:39 97.56 1190 74.25 0.0 POPTRDRAFT_568667 hypothetical protein
blastp_kegg lcl|pxb:103944054 1 1186 + 1186 Gaps:62 97.33 1163 75.00 0.0 protein STICHEL-like 3
blastp_pdb 3glh_N 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_M 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_L 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_I 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_H 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_G 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_D 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_C 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_B 453 741 + 289 Gaps:1 77.13 376 30.00 9e-36 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 1xxi_I 453 741 + 289 Gaps:1 78.80 368 30.00 1e-35 mol:protein length:368 DNA polymerase III subunit gamma
blastp_uniprot_sprot sp|F4JRP0|STIL3_ARATH 7 1185 + 1179 Gaps:119 94.35 1097 64.93 0.0 Protein STICHEL-like 3 OS Arabidopsis thaliana GN At4g18820 PE 3 SV 1
blastp_uniprot_sprot sp|F4KEM0|STIL4_ARATH 1 1186 + 1186 Gaps:230 96.69 966 64.99 0.0 Protein STICHEL-like 4 OS Arabidopsis thaliana GN At5g45720 PE 2 SV 1
blastp_uniprot_sprot sp|O64728|STI_ARATH 321 1018 + 698 Gaps:90 56.81 1218 37.57 2e-101 Protein STICHEL OS Arabidopsis thaliana GN STI PE 1 SV 2
blastp_uniprot_sprot sp|F4HW65|STIL1_ARATH 324 1011 + 688 Gaps:89 59.23 1116 37.07 1e-100 Protein STICHEL-like 1 OS Arabidopsis thaliana GN At1g14460 PE 3 SV 1
blastp_uniprot_sprot sp|F4JRP8|STIL2_ARATH 449 1033 + 585 Gaps:97 59.28 857 38.39 6e-82 Protein STICHEL-like 2 OS Arabidopsis thaliana GN At4g24790 PE 2 SV 1
blastp_uniprot_sprot sp|Q89A95|DPO3X_BUCBP 456 733 + 278 Gaps:12 77.30 370 31.82 8e-41 DNA polymerase III subunit gamma OS Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN dnaX PE 3 SV 1
blastp_uniprot_sprot sp|P09122|DPO3X_BACSU 453 742 + 290 Gaps:1 51.69 563 29.55 4e-39 DNA polymerase III subunit gamma/tau OS Bacillus subtilis (strain 168) GN dnaX PE 3 SV 3
blastp_uniprot_sprot sp|P57553|DPO3X_BUCAI 453 726 + 274 Gaps:1 76.18 361 31.27 2e-35 DNA polymerase III subunit gamma OS Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN dnaX PE 3 SV 1
blastp_uniprot_sprot sp|P74876|DPO3X_SALTY 453 741 + 289 Gaps:1 45.17 642 30.00 2e-35 DNA polymerase III subunit tau OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN dnaX PE 3 SV 2
blastp_uniprot_sprot sp|P43746|DPO3X_HAEIN 453 702 + 250 Gaps:1 36.48 688 32.67 5e-35 DNA polymerase III subunit tau/gamma OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN dnaX PE 3 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 470 628 159 PF13177 none DNA polymerase III, delta subunit none
Phobius 1 599 599 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 487 628 142 SM00382 none ATPases associated with a variety of cellular activities IPR003593
PANTHER 794 849 56 PTHR11669 none none none
PANTHER 429 754 326 PTHR11669 none none none
Pfam 684 742 59 PF12169 none DNA polymerase III subunits gamma and tau domain III IPR022754
Phobius 618 762 145 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 786 1195 410 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 783 814 32 Coil none none none
Phobius 600 617 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 429 754 326 PTHR11669:SF0 none none none
PANTHER 794 849 56 PTHR11669:SF0 none none none
Gene3D 451 618 168 G3DSA:3.40.50.300 none none IPR027417
Gene3D 619 691 73 G3DSA:1.10.8.60 none none none
SUPERFAMILY 699 824 126 SSF48019 "Reactome:REACT_152","Reactome:REACT_1538","Reactome:REACT_216","Reactome:REACT_22172","Reactome:REACT_383" none IPR008921
TIGRFAM 454 824 371 TIGR02397 none dnaX_nterm: DNA polymerase III, subunit gamma and tau IPR012763
SUPERFAMILY 484 675 192 SSF52540 none none IPR027417
Phobius 763 785 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

2 Localization

Analysis Start End Length
TMHMM 763 785 22
TMHMM 724 746 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting