Protein : Qrob_P0484880.2 Q. robur
Protein Identifier  ? Qrob_P0484880.2 Organism . Name  Quercus robur
Score  33.1 Score Type  egn
Protein Description  (M=1) PF00562//PF04560//PF04567 - RNA polymerase Rpb2, domain 6 // RNA polymerase Rpb2, domain 7 // RNA polymerase Rpb2, domain 5 Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 526  
Kegg Orthology  K03021
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_044750 7 525 + 519 Gaps:41 48.36 1158 81.61 0.0 DNA-directed RNA polymerase isoform 1
blastp_kegg lcl|cit:102608510 7 525 + 519 Gaps:41 48.74 1149 78.57 0.0 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|sot:102600550 7 525 + 519 Gaps:41 48.57 1153 78.57 0.0 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|vvi:100264262 7 525 + 519 Gaps:41 49.04 1142 78.57 0.0 POLR3B polymerase (RNA) III (DNA directed) polypeptide B
blastp_kegg lcl|sly:101251637 7 525 + 519 Gaps:41 47.34 1183 78.75 0.0 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|cic:CICLE_v10000078mg 7 525 + 519 Gaps:41 48.74 1149 78.04 0.0 hypothetical protein
blastp_kegg lcl|csv:101212145 7 525 + 519 Gaps:43 48.19 1158 78.49 0.0 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|cmo:103500795 7 525 + 519 Gaps:43 48.19 1158 78.14 0.0 DNA-directed RNA polymerase III subunit RPC2
blastp_kegg lcl|rcu:RCOM_0620590 8 525 + 518 Gaps:44 48.81 1139 78.60 0.0 DNA-directed RNA polymerase III subunit putative
blastp_kegg lcl|fve:101302123 7 525 + 519 Gaps:42 47.89 1163 77.02 0.0 DNA-directed RNA polymerase III subunit RPC2-like
blastp_pdb 3hkz_J 1 524 + 524 Gaps:63 49.73 1124 39.36 1e-124 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 3hkz_B 1 524 + 524 Gaps:63 49.73 1124 39.36 1e-124 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 2pmz_R 1 524 + 524 Gaps:63 49.73 1124 39.36 1e-124 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 2pmz_B 1 524 + 524 Gaps:63 49.73 1124 39.36 1e-124 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 2y0s_R 1 524 + 524 Gaps:63 49.43 1131 39.36 4e-124 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 2y0s_B 1 524 + 524 Gaps:63 49.43 1131 39.36 4e-124 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 2wb1_R 1 524 + 524 Gaps:63 49.43 1131 39.36 4e-124 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 2wb1_B 1 524 + 524 Gaps:63 49.43 1131 39.36 4e-124 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 2waq_B 1 524 + 524 Gaps:63 49.43 1131 39.36 4e-124 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 3h0g_N 12 520 + 509 Gaps:120 48.84 1210 39.26 2e-119 mol:protein length:1210 DNA-directed RNA polymerase II subunit RPB2
blastp_uniprot_sprot sp|P59470|RPC2_MOUSE 7 524 + 518 Gaps:65 48.46 1133 57.92 0.0 DNA-directed RNA polymerase III subunit RPC2 OS Mus musculus GN Polr3b PE 2 SV 2
blastp_uniprot_sprot sp|Q9NW08|RPC2_HUMAN 7 524 + 518 Gaps:65 48.46 1133 58.11 0.0 DNA-directed RNA polymerase III subunit RPC2 OS Homo sapiens GN POLR3B PE 1 SV 2
blastp_uniprot_sprot sp|Q10233|RPC2_SCHPO 7 524 + 518 Gaps:59 47.30 1165 56.26 0.0 DNA-directed RNA polymerase III subunit RPC2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc2 PE 2 SV 1
blastp_uniprot_sprot sp|P25167|RPC2_DROME 7 522 + 516 Gaps:58 48.02 1137 55.68 0.0 DNA-directed RNA polymerase III subunit RPC2 OS Drosophila melanogaster GN RpIII128 PE 2 SV 2
blastp_uniprot_sprot sp|P22276|RPC2_YEAST 7 524 + 518 Gaps:56 47.69 1149 56.39 0.0 DNA-directed RNA polymerase III subunit RPC2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RET1 PE 1 SV 2
blastp_uniprot_sprot sp|Q54IZ9|RPC2_DICDI 8 525 + 518 Gaps:54 33.96 1608 56.96 0.0 DNA-directed RNA polymerase III subunit rpc2 OS Dictyostelium discoideum GN polr3b PE 3 SV 1
blastp_uniprot_sprot sp|O27124|RPOB1_METTH 8 524 + 517 Gaps:53 91.54 603 41.67 2e-138 DNA-directed RNA polymerase subunit B' OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN rpoB1 PE 3 SV 1
blastp_uniprot_sprot sp|P09845|RPOB1_METTW 8 524 + 517 Gaps:54 91.56 604 41.23 1e-137 DNA-directed RNA polymerase subunit B' OS Methanothermobacter thermoautotrophicus (strain Winter) GN rpoB1 PE 3 SV 2
blastp_uniprot_sprot sp|O28392|RPOB1_ARCFU 8 524 + 517 Gaps:52 91.56 604 41.41 4e-136 DNA-directed RNA polymerase subunit B' OS Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN rpoB1 PE 4 SV 1
blastp_uniprot_sprot sp|Q60181|RPOB1_METJA 8 522 + 515 Gaps:62 87.58 636 40.93 2e-135 DNA-directed RNA polymerase subunit B' OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN rpoB1 PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 115 429 315 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
Pfam 46 86 41 PF04567 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 5 IPR007647
PANTHER 7 525 519 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
SUPERFAMILY 7 522 516 SSF64484 none none none
Gene3D 78 122 45 G3DSA:3.90.1100.10 none none none
Gene3D 138 270 133 G3DSA:2.40.50.150 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR014724
ProSitePatterns 277 289 13 PS01166 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerases beta chain signature. IPR007121
Pfam 431 522 92 PF04560 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 7 IPR007641
Gene3D 123 137 15 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Gene3D 271 407 137 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
PANTHER 7 525 519 PTHR20856:SF8 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting