Protein : Qrob_P0484860.2 Q. robur
Protein Identifier  ? Qrob_P0484860.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) K03021 - DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 274  
Kegg Orthology  K03021
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0620590 1 268 + 268 Gaps:35 20.81 1139 75.95 4e-112 DNA-directed RNA polymerase III subunit putative
blastp_kegg lcl|pop:POPTR_0015s005302 1 268 + 268 Gaps:48 24.18 1034 72.00 4e-112 POPTRDRAFT_900808 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10000078mg 1 268 + 268 Gaps:48 21.76 1149 72.80 2e-111 hypothetical protein
blastp_kegg lcl|cit:102608510 1 268 + 268 Gaps:48 21.76 1149 72.80 3e-111 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|fve:101302123 1 268 + 268 Gaps:48 21.50 1163 72.40 5e-111 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|vvi:100264262 1 268 + 268 Gaps:51 22.15 1142 71.94 2e-110 POLR3B polymerase (RNA) III (DNA directed) polypeptide B
blastp_kegg lcl|cmo:103500795 1 268 + 268 Gaps:48 21.59 1158 71.20 2e-108 DNA-directed RNA polymerase III subunit RPC2
blastp_kegg lcl|csv:101212145 1 268 + 268 Gaps:48 21.59 1158 71.20 3e-108 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|tcc:TCM_044750 1 268 + 268 Gaps:49 21.68 1158 70.92 3e-108 DNA-directed RNA polymerase isoform 1
blastp_kegg lcl|sly:101251637 1 268 + 268 Gaps:50 21.30 1183 68.65 4e-105 DNA-directed RNA polymerase III subunit RPC2-like
blastp_pdb 3h0g_N 107 269 + 163 Gaps:4 13.31 1210 39.13 6e-31 mol:protein length:1210 DNA-directed RNA polymerase II subunit RPB2
blastp_pdb 3h0g_B 107 269 + 163 Gaps:4 13.31 1210 39.13 6e-31 mol:protein length:1210 DNA-directed RNA polymerase II subunit RPB2
blastp_pdb 4a93_B 1 270 + 270 Gaps:52 20.42 1224 30.40 3e-29 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3m_B 1 270 + 270 Gaps:52 20.42 1224 30.40 3e-29 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3l_B 1 270 + 270 Gaps:52 20.42 1224 30.40 3e-29 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3k_B 1 270 + 270 Gaps:52 20.42 1224 30.40 3e-29 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3j_B 1 270 + 270 Gaps:52 20.42 1224 30.40 3e-29 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3i_B 1 270 + 270 Gaps:52 20.42 1224 30.40 3e-29 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3g_B 1 270 + 270 Gaps:52 20.42 1224 30.40 3e-29 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3f_B 1 270 + 270 Gaps:52 20.42 1224 30.40 3e-29 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_uniprot_sprot sp|Q9NW08|RPC2_HUMAN 4 270 + 267 Gaps:52 21.98 1133 57.03 3e-79 DNA-directed RNA polymerase III subunit RPC2 OS Homo sapiens GN POLR3B PE 1 SV 2
blastp_uniprot_sprot sp|P59470|RPC2_MOUSE 4 268 + 265 Gaps:52 21.80 1133 57.49 7e-79 DNA-directed RNA polymerase III subunit RPC2 OS Mus musculus GN Polr3b PE 2 SV 2
blastp_uniprot_sprot sp|P22276|RPC2_YEAST 3 268 + 266 Gaps:48 21.58 1149 54.03 3e-74 DNA-directed RNA polymerase III subunit RPC2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RET1 PE 1 SV 2
blastp_uniprot_sprot sp|Q10233|RPC2_SCHPO 4 273 + 270 Gaps:52 21.80 1165 53.15 3e-74 DNA-directed RNA polymerase III subunit RPC2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc2 PE 2 SV 1
blastp_uniprot_sprot sp|P25167|RPC2_DROME 7 272 + 266 Gaps:51 21.72 1137 51.82 2e-68 DNA-directed RNA polymerase III subunit RPC2 OS Drosophila melanogaster GN RpIII128 PE 2 SV 2
blastp_uniprot_sprot sp|Q54IZ9|RPC2_DICDI 4 244 + 241 Gaps:51 14.05 1608 51.33 1e-61 DNA-directed RNA polymerase III subunit rpc2 OS Dictyostelium discoideum GN polr3b PE 3 SV 1
blastp_uniprot_sprot sp|Q8SR75|RPB2_ENCCU 107 269 + 163 Gaps:4 14.11 1141 38.51 6e-31 DNA-directed RNA polymerase II subunit RPB2 OS Encephalitozoon cuniculi (strain GB-M1) GN RPB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q10578|RPB2_CAEEL 3 269 + 267 Gaps:49 19.11 1193 35.53 1e-30 DNA-directed RNA polymerase II subunit RPB2 OS Caenorhabditis elegans GN rpb-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q02061|RPB2_SCHPO 107 269 + 163 Gaps:4 13.31 1210 39.13 2e-30 DNA-directed RNA polymerase II subunit RPB2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpb2 PE 1 SV 2
blastp_uniprot_sprot sp|P08266|RPB2_DROME 19 269 + 251 Gaps:50 19.47 1176 33.62 5e-30 DNA-directed RNA polymerase II subunit RPB2 OS Drosophila melanogaster GN RpII140 PE 2 SV 2

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 192 257 66 PF04565 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 3 IPR007645
SUPERFAMILY 6 69 64 SSF64484 none none none
SUPERFAMILY 103 268 166 SSF64484 none none none
PANTHER 100 269 170 PTHR20856:SF8 none none none
PANTHER 1 67 67 PTHR20856:SF8 none none none
Gene3D 106 266 161 G3DSA:3.90.1100.10 none none none
Gene3D 1 73 73 G3DSA:3.90.1110.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007642
PANTHER 100 269 170 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
PANTHER 1 67 67 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting