Protein : Qrob_P0484840.2 Q. robur
Protein Identifier  ? Qrob_P0484840.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) KOG0214//KOG0215 - RNA polymerase II second largest subunit [Transcription]. // RNA polymerase III second largest subunit [Transcription]. Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 188  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103334567 11 118 + 108 Gaps:1 53.23 201 71.03 5e-46 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|pper:PRUPE_ppa023422mg 11 118 + 108 Gaps:1 23.88 448 70.09 6e-43 hypothetical protein
blastp_kegg lcl|tcc:TCM_044750 20 118 + 99 none 8.55 1158 74.75 1e-42 DNA-directed RNA polymerase isoform 1
blastp_kegg lcl|pxb:103956463 6 129 + 124 Gaps:2 10.48 1164 63.93 2e-41 DNA-directed RNA polymerase III subunit RPC2
blastp_kegg lcl|rcu:RCOM_0620590 20 130 + 111 Gaps:1 9.66 1139 70.00 2e-41 DNA-directed RNA polymerase III subunit putative
blastp_kegg lcl|cic:CICLE_v10000078mg 4 118 + 115 Gaps:5 9.57 1149 68.18 4e-41 hypothetical protein
blastp_kegg lcl|cit:102608510 4 118 + 115 Gaps:5 9.57 1149 68.18 5e-41 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|csv:101212145 6 118 + 113 Gaps:5 10.19 1158 66.95 6e-41 DNA-directed RNA polymerase III subunit RPC2-like
blastp_kegg lcl|cmo:103500795 15 118 + 104 none 8.98 1158 72.12 8e-41 DNA-directed RNA polymerase III subunit RPC2
blastp_kegg lcl|mdm:103430960 6 129 + 124 Gaps:2 10.48 1164 63.11 2e-40 DNA-directed RNA polymerase III subunit RPC2-like
blastp_pdb 2y0s_R 34 118 + 85 Gaps:2 7.52 1131 38.82 6e-12 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 2y0s_B 34 118 + 85 Gaps:2 7.52 1131 38.82 6e-12 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 2wb1_R 34 118 + 85 Gaps:2 7.52 1131 38.82 6e-12 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 2wb1_B 34 118 + 85 Gaps:2 7.52 1131 38.82 6e-12 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 2waq_B 34 118 + 85 Gaps:2 7.52 1131 38.82 6e-12 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 3hkz_J 34 118 + 85 Gaps:2 7.56 1124 38.82 7e-12 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 3hkz_B 34 118 + 85 Gaps:2 7.56 1124 38.82 7e-12 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 2pmz_R 34 118 + 85 Gaps:2 7.56 1124 38.82 7e-12 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 2pmz_B 34 118 + 85 Gaps:2 7.56 1124 38.82 7e-12 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 4a93_B 26 118 + 93 Gaps:13 8.50 1224 34.62 3e-08 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_uniprot_sprot sp|Q54IZ9|RPC2_DICDI 25 118 + 94 Gaps:1 5.91 1608 50.53 5e-26 DNA-directed RNA polymerase III subunit rpc2 OS Dictyostelium discoideum GN polr3b PE 3 SV 1
blastp_uniprot_sprot sp|Q10233|RPC2_SCHPO 25 118 + 94 Gaps:1 8.15 1165 47.37 4e-24 DNA-directed RNA polymerase III subunit RPC2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc2 PE 2 SV 1
blastp_uniprot_sprot sp|P59470|RPC2_MOUSE 25 118 + 94 Gaps:1 8.38 1133 49.47 6e-24 DNA-directed RNA polymerase III subunit RPC2 OS Mus musculus GN Polr3b PE 2 SV 2
blastp_uniprot_sprot sp|Q9NW08|RPC2_HUMAN 25 118 + 94 Gaps:1 8.38 1133 49.47 6e-24 DNA-directed RNA polymerase III subunit RPC2 OS Homo sapiens GN POLR3B PE 1 SV 2
blastp_uniprot_sprot sp|P25167|RPC2_DROME 21 118 + 98 Gaps:3 8.71 1137 49.49 1e-23 DNA-directed RNA polymerase III subunit RPC2 OS Drosophila melanogaster GN RpIII128 PE 2 SV 2
blastp_uniprot_sprot sp|P22276|RPC2_YEAST 25 118 + 94 Gaps:1 8.09 1149 52.69 5e-22 DNA-directed RNA polymerase III subunit RPC2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RET1 PE 1 SV 2
blastp_uniprot_sprot sp|P11513|RPOB_SULAC 35 118 + 84 Gaps:3 7.55 1126 32.94 4e-08 DNA-directed RNA polymerase subunit B OS Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN rpoB PE 3 SV 2
blastp_uniprot_sprot sp|Q753Q4|RPB2_ASHGO 28 118 + 91 Gaps:13 8.35 1222 31.37 6e-08 DNA-directed RNA polymerase II subunit RPB2 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN RPB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6FLD5|RPB2_CANGA 26 118 + 93 Gaps:13 8.50 1223 30.77 9e-08 DNA-directed RNA polymerase II subunit RPB2 OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN RPB2 PE 3 SV 1
blastp_uniprot_sprot sp|P08518|RPB2_YEAST 26 118 + 93 Gaps:13 8.50 1224 34.62 9e-08 DNA-directed RNA polymerase II subunit RPB2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPB2 PE 1 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 184 187 4 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 40 119 80 G3DSA:3.90.1100.10 none none none
SUPERFAMILY 28 133 106 SSF64484 none none none
Phobius 112 130 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 136 154 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 13 118 106 PTHR20856:SF8 none none none
Phobius 131 135 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 13 118 106 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
Pfam 47 118 72 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644
Phobius 155 165 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 111 111 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 166 183 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

2 Localization

Analysis Start End Length
TMHMM 132 154 22
TMHMM 164 181 17

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting