Protein : Qrob_P0483730.2 Q. robur
Protein Identifier  ? Qrob_P0483730.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) KOG0987 - DNA helicase PIF1/RRM3 [Cell cycle control cell division chromosome partitioning]. Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 206  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0000723 telomere maintenance Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences.
GO:0003678 DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103936792 1 202 + 202 none 22.15 912 55.94 6e-73 uncharacterized LOC103936792
blastp_kegg lcl|pxb:103941658 1 202 + 202 none 15.78 1280 55.94 9e-73 uncharacterized LOC103941658
blastp_kegg lcl|pxb:103941837 1 202 + 202 none 17.16 1177 55.94 2e-72 uncharacterized LOC103941837
blastp_kegg lcl|pxb:103941836 1 202 + 202 none 17.16 1177 55.94 2e-72 uncharacterized LOC103941836
blastp_kegg lcl|pxb:103945714 1 202 + 202 none 20.59 981 55.94 2e-72 uncharacterized LOC103945714
blastp_kegg lcl|pxb:103945713 1 202 + 202 none 20.59 981 55.94 2e-72 uncharacterized LOC103945713
blastp_kegg lcl|pxb:103942593 1 202 + 202 none 15.42 1310 55.94 2e-72 uncharacterized LOC103942593
blastp_kegg lcl|pxb:103967103 1 202 + 202 none 21.22 952 55.45 2e-71 uncharacterized LOC103967103
blastp_kegg lcl|pxb:103967102 1 202 + 202 none 20.89 967 55.45 3e-71 uncharacterized LOC103967102
blastp_kegg lcl|pxb:103957680 1 202 + 202 none 22.65 892 55.45 2e-70 uncharacterized LOC103957680
blastp_uniprot_sprot sp|Q381V6|PIF4_TRYB2 99 201 + 103 Gaps:5 12.94 819 33.02 5e-08 ATP-dependent DNA helicase PIF4 OS Trypanosoma brucei brucei (strain 927/4 GUTat10.1) GN PIF4 PE 3 SV 1
rpsblast_cdd gnl|CDD|191413 75 202 + 128 none 35.16 364 48.44 3e-40 pfam05970 PIF1 PIF1-like helicase. This family includes homologues of the PIF1 helicase which inhibits telomerase activity and is cell cycle regulated. This family includes a large number of largely uncharacterized plant proteins. This family includes a P-loop motif that is involved in nucleotide binding.
rpsblast_kog gnl|CDD|36205 12 202 + 191 Gaps:4 35.37 540 39.27 3e-28 KOG0987 KOG0987 KOG0987 DNA helicase PIF1/RRM3 [Cell cycle control cell division chromosome partitioning].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 69 195 127 G3DSA:3.40.50.300 none none IPR027417
Pfam 75 202 128 PF05970 none PIF1-like helicase IPR010285
PANTHER 1 202 202 PTHR10492:SF17 none none none
PANTHER 1 202 202 PTHR10492 none none none
SUPERFAMILY 59 202 144 SSF52540 none none IPR027417

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting