Protein : Qrob_P0482720.2 Q. robur
Protein Identifier  ? Qrob_P0482720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K12666 - oligosaccharyltransferase complex subunit alpha (ribophorin I) Code Enzyme  EC:2.4.99.18
Gene Prediction Quality  validated Protein length 

Sequence

Length: 604  
Kegg Orthology  K12666
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0006486 protein glycosylation A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002999mg 2 603 + 602 Gaps:9 99.67 613 77.91 0.0 hypothetical protein
blastp_kegg lcl|pmum:103336642 2 603 + 602 Gaps:9 99.67 613 77.91 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A
blastp_kegg lcl|pxb:103961750 2 603 + 602 Gaps:9 99.67 613 76.92 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like
blastp_kegg lcl|vvi:100249589 3 603 + 601 Gaps:9 100.00 610 77.21 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like
blastp_kegg lcl|mdm:103436714 2 603 + 602 Gaps:9 99.67 613 76.60 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A
blastp_kegg lcl|tcc:TCM_034432 6 603 + 598 Gaps:9 99.35 611 77.10 0.0 Ribophorin I isoform 1
blastp_kegg lcl|pxb:103952914 3 603 + 601 Gaps:9 100.00 610 76.72 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like
blastp_kegg lcl|cit:102628036 2 603 + 602 Gaps:9 99.19 616 75.78 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like
blastp_kegg lcl|fve:101294268 20 603 + 584 Gaps:9 97.05 611 76.90 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like
blastp_kegg lcl|cmo:103502612 20 603 + 584 Gaps:9 97.21 610 75.72 0.0 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A
blastp_uniprot_sprot sp|Q9SFX3|OST1A_ARATH 19 603 + 585 Gaps:9 96.74 614 67.51 0.0 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS Arabidopsis thaliana GN OST1A PE 2 SV 1
blastp_uniprot_sprot sp|Q0DJC5|OST1A_ORYSJ 23 603 + 581 Gaps:11 95.61 615 64.12 0.0 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS Oryza sativa subsp. japonica GN OST1A PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUA0|OST1B_ARATH 3 452 + 450 Gaps:21 99.78 464 52.70 8e-160 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS Arabidopsis thaliana GN OST1B PE 2 SV 1
blastp_uniprot_sprot sp|B9FDT1|OST1B_ORYSJ 31 453 + 423 Gaps:12 91.54 473 53.58 2e-152 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS Oryza sativa subsp. japonica GN OST1B PE 2 SV 1
blastp_uniprot_sprot sp|Q9GMB0|RPN1_PIG 25 598 + 574 Gaps:33 94.57 608 33.74 1e-97 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS Sus scrofa GN RPN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RFB6|RPN1_PONAB 25 598 + 574 Gaps:33 94.73 607 33.39 2e-96 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS Pongo abelii GN RPN1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4R4T0|RPN1_MACFA 25 598 + 574 Gaps:33 94.73 607 33.57 5e-96 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS Macaca fascicularis GN RPN1 PE 2 SV 1
blastp_uniprot_sprot sp|P04843|RPN1_HUMAN 25 598 + 574 Gaps:33 94.73 607 33.22 8e-96 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS Homo sapiens GN RPN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q91YQ5|RPN1_MOUSE 25 576 + 552 Gaps:39 92.93 608 33.81 2e-95 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS Mus musculus GN Rpn1 PE 2 SV 1
blastp_uniprot_sprot sp|P07153|RPN1_RAT 25 574 + 550 Gaps:36 93.22 605 32.45 1e-93 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS Rattus norvegicus GN Rpn1 PE 2 SV 1
rpsblast_cdd gnl|CDD|191038 24 445 + 422 Gaps:23 100.00 429 42.42 1e-136 pfam04597 Ribophorin_I Ribophorin I. Ribophorin I is an essential subunit of oligosaccharyltransferase (OST) which is also known as Dolichyl-diphosphooligosaccharide--protein glycosyltransferase (EC:2.4.1.119). OST catalyzes the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are though to be responsible for OST catalytic activity. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function Most family members are predicted to have a transmembrane helix at the C terminus of this region.
rpsblast_kog gnl|CDD|37502 3 597 + 595 Gaps:26 99.17 602 42.88 1e-173 KOG2291 KOG2291 KOG2291 Oligosaccharyltransferase alpha subunit (ribophorin I) [Posttranslational modification protein turnover chaperones].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 24 426 403 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 25 444 420 PF04597 "KEGG:00510+2.4.99.18","KEGG:00513+2.4.99.18","UniPathway:UPA00378" Ribophorin I IPR007676
Phobius 20 23 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Coils 572 593 22 Coil none none none
Phobius 447 603 157 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 9 19 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 1 600 600 PTHR21049:SF0 none none none
Phobius 427 446 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 1 600 600 PTHR21049 "KEGG:00510+2.4.99.18","KEGG:00513+2.4.99.18","UniPathway:UPA00378";signature_desc=RIBOPHORIN I none IPR007676

1 Localization

Analysis Start End Length
TMHMM 426 443 17

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting