Protein : Qrob_P0481430.2 Q. robur
Protein Identifier  ? Qrob_P0481430.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=2) PTHR13520 - RAD50-INTERACTING PROTEIN 1 (PROTEIN RINT-1) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 845  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0048193 Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103338393 10 844 + 835 Gaps:41 99.50 800 76.51 0.0 RINT1-like protein
blastp_kegg lcl|pper:PRUPE_ppa001570mg 10 844 + 835 Gaps:41 99.50 800 76.38 0.0 hypothetical protein
blastp_kegg lcl|mdm:103455334 4 844 + 841 Gaps:41 99.88 803 73.19 0.0 uncharacterized LOC103455334
blastp_kegg lcl|mdm:103428304 4 844 + 841 Gaps:41 99.88 803 72.94 0.0 RINT1-like protein
blastp_kegg lcl|tcc:TCM_013921 6 842 + 837 Gaps:48 99.50 795 74.84 0.0 RINT-1 / TIP-1 family isoform 1
blastp_kegg lcl|vvi:100263828 23 844 + 822 Gaps:41 97.62 800 74.39 0.0 RINT1-like protein-like
blastp_kegg lcl|pxb:103958738 4 844 + 841 Gaps:41 99.88 803 72.07 0.0 RAD50-interacting protein 1
blastp_kegg lcl|cit:102625446 6 842 + 837 Gaps:42 99.50 801 72.15 0.0 RINT1-like protein-like
blastp_kegg lcl|cic:CICLE_v10018904mg 6 842 + 837 Gaps:42 99.50 801 72.27 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1514740 16 844 + 829 Gaps:42 98.75 799 71.99 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q9VS46|RINT1_DROME 336 802 + 467 Gaps:74 57.87 724 27.45 2e-17 RINT1-like protein OS Drosophila melanogaster GN CG8605 PE 2 SV 2
blastp_uniprot_sprot sp|Q6NUQ1|RINT1_HUMAN 251 805 + 555 Gaps:87 65.40 792 24.71 4e-17 RAD50-interacting protein 1 OS Homo sapiens GN RINT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8BZ36|RINT1_MOUSE 251 805 + 555 Gaps:75 65.40 792 25.29 7e-16 RAD50-interacting protein 1 OS Mus musculus GN Rint1 PE 2 SV 2
rpsblast_cdd gnl|CDD|203012 339 841 + 503 Gaps:64 100.00 483 35.61 1e-119 pfam04437 RINT1_TIP1 RINT-1 / TIP-1 family. This family includes RINT-1 a Rad50 interacting protein which participates in radiation induced checkpoint control as well as the TIP-1 protein from yeast that seems to be involved in a complex with Sec20p that is required for golgi transport.
rpsblast_kog gnl|CDD|37429 10 842 + 833 Gaps:120 99.73 737 33.20 1e-127 KOG2218 KOG2218 KOG2218 ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking secretion and vesicular transport Cell cycle control cell division chromosome partitioning].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 206 844 639 PTHR13520 none none none
Pfam 339 841 503 PF04437 none RINT-1 / TIP-1 family IPR007528
ProSiteProfiles 248 844 597 PS51386 none RINT1/TIP20 domain profile. IPR007528
PANTHER 10 107 98 PTHR13520:SF1 none none none
PANTHER 142 190 49 PTHR13520:SF1 none none none
PANTHER 206 844 639 PTHR13520:SF1 none none none
PANTHER 10 107 98 PTHR13520 none none none
PANTHER 142 190 49 PTHR13520 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting