Protein : Qrob_P0478130.2 Q. robur
Protein Identifier  ? Qrob_P0478130.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K06215 - pyridoxine biosynthesis protein [EC:4.-.-.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 305  
Kegg Orthology  K06215
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0042819 vitamin B6 biosynthetic process The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
GO:0042823 pyridoxal phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s18240g 1 301 + 301 Gaps:1 99.02 305 78.15 7e-175 POPTRDRAFT_548840 pyridoxin biosynthesis PDX1-like protein 2
blastp_kegg lcl|cit:102610004 1 301 + 301 none 99.01 304 75.75 1e-171 probable pyridoxal biosynthesis protein PDX1.2-like
blastp_kegg lcl|cic:CICLE_v10026152mg 1 301 + 301 none 99.01 304 75.75 2e-171 hypothetical protein
blastp_kegg lcl|tcc:TCM_028738 1 299 + 299 Gaps:1 84.27 356 76.00 3e-171 Pyridoxine biosynthesis 1.2
blastp_kegg lcl|pmum:103327929 2 300 + 299 Gaps:1 97.40 308 76.67 6e-171 probable pyridoxal biosynthesis protein PDX1.2
blastp_kegg lcl|pper:PRUPE_ppa009060mg 2 300 + 299 Gaps:1 97.40 308 76.33 2e-170 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1494520 1 303 + 303 Gaps:1 99.67 305 73.03 3e-165 Pyridoxin biosynthesis protein PDX1 putative
blastp_kegg lcl|mdm:103434771 2 300 + 299 Gaps:5 97.40 308 75.33 1e-161 probable pyridoxal biosynthesis protein PDX1.2
blastp_kegg lcl|pxb:103937773 2 300 + 299 Gaps:3 97.42 310 73.51 1e-161 probable pyridoxal biosynthesis protein PDX1.2
blastp_kegg lcl|mdm:103418387 2 300 + 299 Gaps:5 97.40 308 75.33 1e-161 probable pyridoxal biosynthesis protein PDX1.2
blastp_pdb 2zbt_D 23 293 + 271 Gaps:7 92.93 297 51.81 2e-97 mol:protein length:297 Pyridoxal biosynthesis lyase pdxS
blastp_pdb 2zbt_C 23 293 + 271 Gaps:7 92.93 297 51.81 2e-97 mol:protein length:297 Pyridoxal biosynthesis lyase pdxS
blastp_pdb 2zbt_B 23 293 + 271 Gaps:7 92.93 297 51.81 2e-97 mol:protein length:297 Pyridoxal biosynthesis lyase pdxS
blastp_pdb 2zbt_A 23 293 + 271 Gaps:7 92.93 297 51.81 2e-97 mol:protein length:297 Pyridoxal biosynthesis lyase pdxS
blastp_pdb 4adu_B 25 282 + 258 Gaps:7 88.55 297 50.57 2e-89 mol:protein length:297 PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE
blastp_pdb 4adu_A 25 282 + 258 Gaps:7 88.55 297 50.57 2e-89 mol:protein length:297 PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE
blastp_pdb 4adt_B 25 282 + 258 Gaps:7 88.55 297 50.57 2e-89 mol:protein length:297 PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE
blastp_pdb 4adt_A 25 282 + 258 Gaps:7 88.55 297 50.57 2e-89 mol:protein length:297 PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE
blastp_pdb 4ads_F 25 282 + 258 Gaps:7 93.26 282 50.57 3e-89 mol:protein length:282 PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE
blastp_pdb 4ads_E 25 282 + 258 Gaps:7 93.26 282 50.57 3e-89 mol:protein length:282 PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE
blastp_uniprot_sprot sp|Q9ZNR6|PDX12_ARATH 3 303 + 301 Gaps:3 96.82 314 68.09 2e-155 Probable pyridoxal biosynthesis protein PDX1.2 OS Arabidopsis thaliana GN PDX12 PE 1 SV 1
blastp_uniprot_sprot sp|Q8L940|PDX13_ARATH 1 303 + 303 Gaps:7 99.68 309 61.04 5e-137 Pyridoxal biosynthesis protein PDX1.3 OS Arabidopsis thaliana GN PDX13 PE 1 SV 2
blastp_uniprot_sprot sp|Q39963|PDX1_HEVBR 1 303 + 303 Gaps:7 99.68 309 60.71 1e-135 Probable pyridoxal biosynthesis protein PDX1 OS Hevea brasiliensis GN PDX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FT25|PDX1_PHAVU 7 303 + 297 Gaps:8 97.12 312 61.06 1e-133 Pyridoxal biosynthesis protein PDX1 OS Phaseolus vulgaris GN PDX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9AT63|PDX1_GINBI 1 303 + 303 Gaps:7 99.68 309 58.77 2e-130 Probable pyridoxal biosynthesis protein PDX1 OS Ginkgo biloba GN PDX1 PE 2 SV 1
blastp_uniprot_sprot sp|O80448|PDX11_ARATH 1 303 + 303 Gaps:9 99.68 309 60.06 4e-130 Pyridoxal biosynthesis protein PDX1.1 OS Arabidopsis thaliana GN PDX11 PE 1 SV 1
blastp_uniprot_sprot sp|Q69LA6|PDX11_ORYSJ 1 303 + 303 Gaps:16 99.69 318 58.04 4e-129 Probable pyridoxal biosynthesis protein PDX1.1 OS Oryza sativa subsp. japonica GN PDX11 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W3D0|PDX12_ORYSJ 1 303 + 303 Gaps:11 99.68 313 58.01 6e-124 Probable pyridoxal biosynthesis protein PDX1.2 OS Oryza sativa subsp. japonica GN PDX12 PE 2 SV 1
blastp_uniprot_sprot sp|B9LIK3|PDXS_CHLSY 19 293 + 275 Gaps:7 95.56 293 53.57 7e-106 Pyridoxal biosynthesis lyase PdxS OS Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN pdxS PE 3 SV 1
blastp_uniprot_sprot sp|A9WFT9|PDXS_CHLAA 19 293 + 275 Gaps:7 95.56 293 53.57 7e-106 Pyridoxal biosynthesis lyase PdxS OS Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN pdxS PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 304 303 PTHR31829:SF0 none none none
Gene3D 39 170 132 G3DSA:3.20.20.70 none none IPR013785
Gene3D 203 281 79 G3DSA:3.20.20.70 none none IPR013785
SUPERFAMILY 35 274 240 SSF51366 none none IPR011060
PIRSF 11 303 293 PIRSF029271 "KEGG:00750+4.3.3.6","MetaCyc:PWY-6466","UniPathway:UPA00245" none IPR001852
ProSiteProfiles 25 304 280 PS51129 "KEGG:00750+4.3.3.6","MetaCyc:PWY-6466","UniPathway:UPA00245" PdxS/SNZ family profile. IPR001852
Pfam 22 223 202 PF01680 "KEGG:00750+4.3.3.6","MetaCyc:PWY-6466","UniPathway:UPA00245" SOR/SNZ family IPR001852
PANTHER 2 304 303 PTHR31829 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting