Protein : Qrob_P0476720.2 Q. robur
Protein Identifier  ? Qrob_P0476720.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR12686 - 3'-5' EXORIBONUCLEASE CSL4-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 79  
Kegg Orthology  K07573
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0000178 exosome (RNase complex) Complex of 3'-5' exoribonucleases.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|atr:s00051p00167860 16 78 + 63 none 57.27 110 87.30 4e-31 AMTR_s00051p00167860 hypothetical protein
blastp_kegg lcl|tcc:TCM_026126 16 78 + 63 none 32.47 194 88.89 2e-30 Nucleic acid-binding isoform 3
blastp_kegg lcl|sly:101246918 16 78 + 63 none 31.50 200 87.30 2e-30 exosome complex component CSL4-like
blastp_kegg lcl|vvi:100263947 16 78 + 63 none 31.50 200 85.71 3e-29 exosome complex component CSL4-like
blastp_kegg lcl|rcu:RCOM_0610390 16 78 + 63 none 10.62 593 90.48 8e-29 hypothetical protein
blastp_kegg lcl|csv:101226679 16 78 + 63 none 32.14 196 84.13 9e-29 exosome complex component CSL4-like
blastp_kegg lcl|csv:101211015 16 78 + 63 none 32.14 196 84.13 9e-29 exosome complex component CSL4-like
blastp_kegg lcl|cmo:103502755 16 78 + 63 none 32.14 196 82.54 2e-28 exosome complex component CSL4
blastp_kegg lcl|gmx:100796154 15 78 + 64 none 32.49 197 82.81 2e-28 exosome complex component CSL4-like
blastp_kegg lcl|cic:CICLE_v10022342mg 16 78 + 63 none 31.82 198 84.13 3e-28 hypothetical protein
blastp_pdb 2nn6_I 22 78 + 57 Gaps:1 27.75 209 63.79 2e-16 mol:protein length:209 3'-5' exoribonuclease CSL4 homolog
blastp_uniprot_sprot sp|O59821|CSL4_SCHPO 24 76 + 53 none 29.28 181 60.38 4e-16 Exosome complex component csl4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN csl4 PE 3 SV 2
blastp_uniprot_sprot sp|Q9Y3B2|EXOS1_HUMAN 22 78 + 57 Gaps:1 29.74 195 63.79 7e-16 Exosome complex component CSL4 OS Homo sapiens GN EXOSC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9DAA6|EXOS1_MOUSE 22 78 + 57 Gaps:1 29.74 195 62.07 1e-15 Exosome complex component CSL4 OS Mus musculus GN Exosc1 PE 2 SV 1
blastp_uniprot_sprot sp|P53859|CSL4_YEAST 7 78 + 72 Gaps:1 25.00 292 52.05 3e-15 Exosome complex component CSL4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CSL4 PE 1 SV 1
rpsblast_cdd gnl|CDD|88466 22 71 + 50 none 54.35 92 72.00 3e-18 cd05791 S1_CSL4 S1_CSL4: CSL4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA rRNA and a number of small RNA species. In S. cerevisiae the exosome includes nine core components six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4 Rrp40 and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure"..
rpsblast_cdd gnl|CDD|192591 22 53 + 32 none 44.44 72 65.62 1e-10 pfam10447 EXOSC1 Exosome component EXOSC1/CSL4. This family of proteins are components of the exosome 3'->5' exoribonuclease complex. The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions.
rpsblast_kog gnl|CDD|38619 20 76 + 57 none 29.53 193 61.40 4e-16 KOG3409 KOG3409 KOG3409 Exosomal 3'-5' exoribonuclease complex subunit ski4 (Csl4) [Translation ribosomal structure and biogenesis].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 22 78 57 PTHR12686 none none none
PANTHER 22 78 57 PTHR12686:SF8 none none none
Pfam 21 53 33 PF10447 none Exosome component EXOSC1/CSL4 IPR019495
SUPERFAMILY 22 76 55 SSF50249 none none IPR012340

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting