Protein : Qrob_P0472230.2 Q. robur
Protein Identifier  ? Qrob_P0472230.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PF06596 - Photosystem II reaction centre X protein (PsbX) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 124  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102612959 3 123 + 121 Gaps:1 99.19 123 81.15 3e-60 uncharacterized LOC102612959
blastp_kegg lcl|cic:CICLE_v10009915mg 3 123 + 121 Gaps:1 99.19 123 81.15 1e-59 hypothetical protein
blastp_kegg lcl|tcc:TCM_037367 3 123 + 121 none 99.18 122 75.21 5e-53 Photosystem II subunit X
blastp_kegg lcl|pmum:103320625 3 123 + 121 none 99.18 122 72.73 8e-52 uncharacterized LOC103320625
blastp_kegg lcl|pop:POPTR_0006s23890g 3 123 + 121 Gaps:2 99.19 124 73.17 5e-51 POPTRDRAFT_832074 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1045940 3 123 + 121 Gaps:4 96.69 121 76.92 1e-49 hypothetical protein
blastp_kegg lcl|pop:POPTR_0018s07160g 3 123 + 121 Gaps:3 96.72 122 73.73 2e-47 membrane family protein
blastp_kegg lcl|sot:102601302 1 123 + 123 Gaps:7 100.00 120 71.67 2e-43 uncharacterized LOC102601302
blastp_kegg lcl|pvu:PHAVU_009G081400g 1 123 + 123 Gaps:4 100.00 121 68.60 2e-42 hypothetical protein
blastp_kegg lcl|cam:101502251 1 123 + 123 Gaps:5 100.00 120 66.67 2e-42 uncharacterized LOC101502251
rpsblast_cdd gnl|CDD|177709 57 122 + 66 none 51.97 127 63.64 4e-13 PLN00088 PLN00088 predicted protein Provisional.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 75 123 49 G3DSA:1.20.5.510 none none none
Pfam 86 123 38 PF06596 none Photosystem II reaction centre X protein (PsbX) IPR009518
Phobius 93 117 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 118 123 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 92 92 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 93 115 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting