Protein : Qrob_P0467110.2 Q. robur
Protein Identifier  ? Qrob_P0467110.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR10037 - VOLTAGE-GATED CATION CHANNEL (CALCIUM AND SODIUM) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 66  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005245 voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103928829 1 65 + 65 none 8.78 740 90.77 7e-32 two pore calcium channel protein 1-like
blastp_kegg lcl|pxb:103948547 1 65 + 65 none 8.82 737 84.62 1e-30 two pore calcium channel protein 1-like
blastp_kegg lcl|pxb:103948535 1 65 + 65 none 8.82 737 84.62 1e-30 two pore calcium channel protein 1-like
blastp_kegg lcl|rcu:RCOM_1174390 1 65 + 65 none 16.46 395 80.00 8e-30 calcium channel putative
blastp_kegg lcl|sot:102594366 1 65 + 65 none 8.81 738 87.69 2e-29 two pore calcium channel protein 1B-like
blastp_kegg lcl|sly:101244201 1 65 + 65 none 8.80 739 87.69 2e-29 two pore calcium channel protein 1A-like
blastp_kegg lcl|ath:AT4G03560 1 65 + 65 none 8.87 733 83.08 7e-29 TPC1 two pore calcium channel protein 1
blastp_kegg lcl|crb:CARUB_v10000313mg 1 65 + 65 none 8.88 732 83.08 8e-29 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_911837 1 65 + 65 none 8.88 732 80.00 3e-28 ATTPC1 two-pore channel 1
blastp_kegg lcl|cam:101493022 1 65 + 65 none 8.84 735 80.00 4e-28 two pore calcium channel protein 1-like
blastp_uniprot_sprot sp|Q75VR0|TPC1B_TOBAC 1 65 + 65 none 8.84 735 87.69 4e-31 Two pore calcium channel protein 1B OS Nicotiana tabacum GN TPC1B PE 2 SV 1
blastp_uniprot_sprot sp|Q75VR1|TPC1A_TOBAC 1 65 + 65 none 8.84 735 87.69 5e-31 Two pore calcium channel protein 1A OS Nicotiana tabacum GN TPC1A PE 2 SV 1
blastp_uniprot_sprot sp|Q94KI8|TPC1_ARATH 1 65 + 65 none 8.87 733 83.08 3e-30 Two pore calcium channel protein 1 OS Arabidopsis thaliana GN TPC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5QM84|TPC1_ORYSJ 1 65 + 65 none 8.59 757 86.15 2e-23 Two pore calcium channel protein 1 OS Oryza sativa subsp. japonica GN TPC1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6S5H8|TPC1_HORVU 1 65 + 65 none 8.76 742 83.08 1e-22 Two pore calcium channel protein 1 OS Hordeum vulgare GN TPC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6YLX9|TPC1_WHEAT 1 65 + 65 none 8.76 742 81.54 2e-21 Two pore calcium channel protein 1 OS Triticum aestivum GN TPC1 PE 2 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 60 60 PTHR10037:SF92 none none IPR028801
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 28 65 38 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 6 27 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 60 60 PTHR10037 none none none

2 Localization

Analysis Start End Length
SignalP_EUK 1 23 22
TMHMM 5 27 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting