Protein : Qrob_P0467090.2 Q. robur
Protein Identifier  ? Qrob_P0467090.2 Organism . Name  Quercus robur
Score  16.2 Score Type  egn
Protein Description  (M=4) PTHR10037 - VOLTAGE-GATED CATION CHANNEL (CALCIUM AND SODIUM) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 233  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005245 voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_008109 1 180 + 180 none 24.42 737 69.44 4e-79 Two-pore channel 1
blastp_kegg lcl|pper:PRUPE_ppa001980mg 29 180 + 152 none 23.64 643 76.32 3e-77 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10014388mg 3 180 + 178 none 23.89 745 68.54 6e-77 hypothetical protein
blastp_kegg lcl|cit:102609722 3 180 + 178 none 23.89 745 68.54 6e-77 two pore calcium channel protein 1-like
blastp_kegg lcl|fve:101302850 3 181 + 179 none 24.29 737 69.27 8e-77 two pore calcium channel protein 1-like
blastp_kegg lcl|pmum:103328451 29 180 + 152 none 20.82 730 76.32 8e-77 two pore calcium channel protein 1
blastp_kegg lcl|pxb:103948547 5 180 + 176 none 23.88 737 68.75 2e-76 two pore calcium channel protein 1-like
blastp_kegg lcl|pxb:103948535 5 180 + 176 none 23.88 737 68.75 2e-76 two pore calcium channel protein 1-like
blastp_kegg lcl|rcu:RCOM_1174400 3 180 + 178 none 23.96 743 69.10 3e-76 Voltage-dependent L-type calcium channel putative
blastp_kegg lcl|pxb:103928829 29 200 + 172 Gaps:2 23.51 740 68.97 5e-76 two pore calcium channel protein 1-like
blastp_uniprot_sprot sp|Q75VR1|TPC1A_TOBAC 3 180 + 178 none 24.22 735 66.29 2e-75 Two pore calcium channel protein 1A OS Nicotiana tabacum GN TPC1A PE 2 SV 1
blastp_uniprot_sprot sp|Q75VR0|TPC1B_TOBAC 3 180 + 178 none 24.22 735 66.29 3e-75 Two pore calcium channel protein 1B OS Nicotiana tabacum GN TPC1B PE 2 SV 1
blastp_uniprot_sprot sp|Q94KI8|TPC1_ARATH 4 180 + 177 none 24.15 733 66.67 2e-73 Two pore calcium channel protein 1 OS Arabidopsis thaliana GN TPC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5QM84|TPC1_ORYSJ 1 180 + 180 none 23.78 757 58.89 2e-63 Two pore calcium channel protein 1 OS Oryza sativa subsp. japonica GN TPC1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6YLX9|TPC1_WHEAT 3 180 + 178 none 23.99 742 58.99 1e-61 Two pore calcium channel protein 1 OS Triticum aestivum GN TPC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6S5H8|TPC1_HORVU 3 180 + 178 none 23.99 742 57.87 1e-60 Two pore calcium channel protein 1 OS Hordeum vulgare GN TPC1 PE 2 SV 1
blastp_uniprot_sprot sp|P97445|CAC1A_MOUSE 24 149 + 126 Gaps:11 5.03 2368 36.97 1e-09 Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS Mus musculus GN Cacna1a PE 1 SV 2
blastp_uniprot_sprot sp|O00555|CAC1A_HUMAN 24 149 + 126 Gaps:11 4.75 2505 36.97 1e-09 Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS Homo sapiens GN CACNA1A PE 1 SV 2
blastp_uniprot_sprot sp|Q00975|CAC1B_HUMAN 28 158 + 131 Gaps:21 5.39 2339 36.51 3e-09 Voltage-dependent N-type calcium channel subunit alpha-1B OS Homo sapiens GN CACNA1B PE 1 SV 1
blastp_uniprot_sprot sp|P27884|CAC1A_RABIT 28 149 + 122 Gaps:11 4.74 2424 37.39 4e-09 Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS Oryctolagus cuniculus GN CACNA1A PE 1 SV 1
rpsblast_cdd gnl|CDD|201279 33 149 + 117 Gaps:8 57.22 194 32.43 2e-11 pfam00520 Ion_trans Ion transport protein. This family contains Sodium Potassium Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices.
rpsblast_kog gnl|CDD|37512 26 153 + 128 Gaps:30 21.98 1592 28.00 7e-26 KOG2301 KOG2301 KOG2301 Voltage-gated Ca2+ channels alpha1 subunits [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|37513 17 150 + 134 Gaps:14 12.99 1956 29.13 1e-10 KOG2302 KOG2302 KOG2302 T-type voltage-gated Ca2+ channel pore-forming alpha1I subunit [Inorganic ion transport and metabolism Signal transduction mechanisms].

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 170 170 PTHR10037 none none none
Phobius 26 46 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 88 107 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 170 170 PTHR10037:SF92 none none IPR028801
Phobius 2 12 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 13 16 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 108 126 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 151 232 82 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 30 153 124 PF00520 none Ion transport protein IPR005821
Gene3D 32 103 72 G3DSA:1.20.120.350 none none IPR027359
Phobius 1 16 16 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 47 57 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 28 148 121 SSF81324 none none none
Phobius 17 25 9 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 77 87 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 58 76 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 127 150 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

3 Localization

Analysis Start End Length
TMHMM 113 135 22
TMHMM 60 82 22
TMHMM 28 47 19

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting