Protein : Qrob_P0467020.2 Q. robur
Protein Identifier  ? Qrob_P0467020.2 Organism . Name  Quercus robur
Score  36.1 Score Type  egn
Protein Description  (M=4) K16900 - two pore calcium channel protein, plant Gene Prediction Quality  validated
Protein length 

Sequence

Length: 336  
Kegg Orthology  K16900
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005245 voltage-gated calcium channel activity Enables the transmembrane transfer of a calcium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10014388mg 7 323 + 317 Gaps:45 48.59 745 65.75 5e-147 hypothetical protein
blastp_kegg lcl|cit:102609722 7 323 + 317 Gaps:45 48.59 745 65.75 5e-147 two pore calcium channel protein 1-like
blastp_kegg lcl|tcc:TCM_008109 8 320 + 313 Gaps:46 48.44 737 68.07 5e-146 Two-pore channel 1
blastp_kegg lcl|csv:101206980 5 323 + 319 Gaps:45 49.32 738 64.29 8e-142 two pore calcium channel protein 1-like
blastp_kegg lcl|fve:101302850 10 315 + 306 Gaps:45 47.63 737 67.52 3e-141 two pore calcium channel protein 1-like
blastp_kegg lcl|brp:103846557 11 315 + 305 Gaps:45 47.43 738 63.14 9e-141 two pore calcium channel protein 1
blastp_kegg lcl|brp:103858693 11 315 + 305 Gaps:45 47.75 733 63.14 6e-140 two pore calcium channel protein 1-like
blastp_kegg lcl|eus:EUTSA_v10029480mg 5 315 + 311 Gaps:45 50.00 712 61.52 3e-139 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001980mg 7 323 + 317 Gaps:45 56.30 643 63.26 7e-139 hypothetical protein
blastp_kegg lcl|cmo:103495512 5 323 + 319 Gaps:45 48.99 743 64.01 2e-137 two pore calcium channel protein 1B
blastp_uniprot_sprot sp|Q94KI8|TPC1_ARATH 23 315 + 293 Gaps:41 45.57 733 63.47 1e-138 Two pore calcium channel protein 1 OS Arabidopsis thaliana GN TPC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q75VR1|TPC1A_TOBAC 23 320 + 298 Gaps:42 46.26 735 61.18 7e-133 Two pore calcium channel protein 1A OS Nicotiana tabacum GN TPC1A PE 2 SV 1
blastp_uniprot_sprot sp|Q75VR0|TPC1B_TOBAC 23 322 + 300 Gaps:41 46.39 735 60.41 9e-133 Two pore calcium channel protein 1B OS Nicotiana tabacum GN TPC1B PE 2 SV 1
blastp_uniprot_sprot sp|Q5QM84|TPC1_ORYSJ 10 323 + 314 Gaps:48 47.03 757 58.15 4e-114 Two pore calcium channel protein 1 OS Oryza sativa subsp. japonica GN TPC1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6YLX9|TPC1_WHEAT 23 327 + 305 Gaps:42 46.50 742 55.94 4e-108 Two pore calcium channel protein 1 OS Triticum aestivum GN TPC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6S5H8|TPC1_HORVU 23 327 + 305 Gaps:42 46.50 742 55.94 5e-107 Two pore calcium channel protein 1 OS Hordeum vulgare GN TPC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q00975|CAC1B_HUMAN 47 314 + 268 Gaps:107 21.63 2339 29.05 1e-16 Voltage-dependent N-type calcium channel subunit alpha-1B OS Homo sapiens GN CACNA1B PE 1 SV 1
blastp_uniprot_sprot sp|Q05152|CAC1B_RABIT 47 314 + 268 Gaps:95 21.55 2339 28.37 6e-16 Voltage-dependent N-type calcium channel subunit alpha-1B OS Oryctolagus cuniculus GN CACNA1B PE 1 SV 1
blastp_uniprot_sprot sp|P27884|CAC1A_RABIT 66 314 + 249 Gaps:96 20.87 2424 28.26 2e-15 Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS Oryctolagus cuniculus GN CACNA1A PE 1 SV 1
blastp_uniprot_sprot sp|O00555|CAC1A_HUMAN 69 299 + 231 Gaps:54 10.10 2505 30.83 4e-15 Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS Homo sapiens GN CACNA1A PE 1 SV 2
rpsblast_cdd gnl|CDD|201279 110 295 + 186 Gaps:23 99.48 194 26.42 3e-15 pfam00520 Ion_trans Ion transport protein. This family contains Sodium Potassium Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices.
rpsblast_kog gnl|CDD|37512 23 316 + 294 Gaps:74 45.60 1592 24.24 2e-39 KOG2301 KOG2301 KOG2301 Voltage-gated Ca2+ channels alpha1 subunits [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|37513 75 320 + 246 Gaps:87 27.04 1956 24.39 1e-14 KOG2302 KOG2302 KOG2302 T-type voltage-gated Ca2+ channel pore-forming alpha1I subunit [Inorganic ion transport and metabolism Signal transduction mechanisms].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 172 191 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 110 295 186 PF00520 none Ion transport protein IPR005821
Phobius 93 111 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 131 141 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 192 210 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 112 130 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 161 171 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 211 234 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 28 315 288 PTHR10037:SF92 none none IPR028801
Phobius 1 74 74 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 235 272 38 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 75 92 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 297 335 39 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 72 233 162 SSF81324 none none none
SUPERFAMILY 262 299 38 SSF81324 none none none
Phobius 273 296 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 142 160 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 28 315 288 PTHR10037 none none none
Gene3D 75 187 113 G3DSA:1.20.120.350 none none IPR027359

5 Localization

Analysis Start End Length
TMHMM 273 295 22
TMHMM 75 92 17
TMHMM 144 166 22
TMHMM 197 219 22
TMHMM 112 131 19

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting