Protein : Qrob_P0466780.2 Q. robur
Protein Identifier  ? Qrob_P0466780.2 Organism . Name  Quercus robur
Score  31.0 Score Type  egn
Protein Description  (M=1) PTHR10211 - DEOXYRIBODIPYRIMIDINE PHOTOLYASE Code Enzyme  EC:4.1.99.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 498  
Kegg Orthology  K01669
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0003913 DNA photolyase activity Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.
GO:0003904 deoxyribodipyrimidine photo-lyase activity Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa004792mg 12 494 + 483 Gaps:13 98.57 491 83.88 0.0 hypothetical protein
blastp_kegg lcl|pmum:103337271 12 494 + 483 Gaps:21 98.60 499 82.11 0.0 deoxyribodipyrimidine photo-lyase
blastp_kegg lcl|tcc:TCM_016083 1 495 + 495 Gaps:11 99.80 495 79.55 0.0 Photolyase 1 isoform 1
blastp_kegg lcl|cmo:103482663 8 495 + 488 Gaps:13 99.59 489 80.70 0.0 deoxyribodipyrimidine photo-lyase
blastp_kegg lcl|mdm:103433070 8 493 + 486 Gaps:12 98.99 493 81.15 0.0 deoxyribodipyrimidine photo-lyase
blastp_kegg lcl|vvi:100243038 19 495 + 477 Gaps:11 98.97 485 82.29 0.0 deoxyribodipyrimidine photo-lyase-like
blastp_kegg lcl|pxb:103952293 8 493 + 486 Gaps:12 98.99 493 80.74 0.0 deoxyribodipyrimidine photo-lyase
blastp_kegg lcl|pop:POPTR_0001s08030g 1 496 + 496 Gaps:13 100.00 497 79.48 0.0 CPD photolyase family protein
blastp_kegg lcl|csv:101211446 8 495 + 488 Gaps:13 99.59 489 80.08 0.0 CSPHR deoxyribodipyrimidine photo-lyase-like
blastp_kegg lcl|rcu:RCOM_1680910 11 493 + 483 Gaps:12 98.77 489 79.50 0.0 DNA photolyase putative (EC:4.1.99.3)
blastp_pdb 3umv_B 2 484 + 483 Gaps:22 96.64 506 63.60 0.0 mol:protein length:506 Deoxyribodipyrimidine photo-lyase
blastp_pdb 3umv_A 2 484 + 483 Gaps:22 96.64 506 63.60 0.0 mol:protein length:506 Deoxyribodipyrimidine photo-lyase
blastp_pdb 2xrz_B 18 468 + 451 Gaps:39 94.19 482 49.78 2e-126 mol:protein length:482 DEOXYRIBODIPYRIMIDINE PHOTOLYASE
blastp_pdb 2xrz_A 18 468 + 451 Gaps:39 94.19 482 49.78 2e-126 mol:protein length:482 DEOXYRIBODIPYRIMIDINE PHOTOLYASE
blastp_pdb 2xry_A 18 468 + 451 Gaps:39 94.19 482 49.78 2e-126 mol:protein length:482 DEOXYRIBODIPYRIMIDINE PHOTOLYASE
blastp_pdb 1tez_D 239 488 + 250 Gaps:54 49.37 474 29.91 5e-07 mol:protein length:474 Deoxyribodipyrimidine photolyase
blastp_pdb 1tez_C 239 488 + 250 Gaps:54 49.37 474 29.91 5e-07 mol:protein length:474 Deoxyribodipyrimidine photolyase
blastp_pdb 1tez_B 239 488 + 250 Gaps:54 49.37 474 29.91 5e-07 mol:protein length:474 Deoxyribodipyrimidine photolyase
blastp_pdb 1tez_A 239 488 + 250 Gaps:54 49.37 474 29.91 5e-07 mol:protein length:474 Deoxyribodipyrimidine photolyase
blastp_pdb 1qnf_A 239 488 + 250 Gaps:54 48.35 484 29.91 6e-07 mol:protein length:484 PHOTOLYASE
blastp_uniprot_sprot sp|Q9SB00|PHR_ARATH 12 491 + 480 Gaps:17 97.78 496 74.64 0.0 Deoxyribodipyrimidine photo-lyase OS Arabidopsis thaliana GN PHR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6F6A2|PHR_ORYSJ 2 484 + 483 Gaps:22 96.64 506 63.80 0.0 Deoxyribodipyrimidine photo-lyase OS Oryza sativa subsp. japonica GN PHR PE 1 SV 1
blastp_uniprot_sprot sp|Q28811|PHR_POTTR 37 464 + 428 Gaps:16 79.32 532 51.90 9e-144 Deoxyribodipyrimidine photo-lyase OS Potorous tridactylus GN PHR PE 2 SV 1
blastp_uniprot_sprot sp|P34205|PHR_CARAU 20 464 + 445 Gaps:20 78.96 556 50.57 5e-143 Deoxyribodipyrimidine photo-lyase OS Carassius auratus GN phr PE 2 SV 1
blastp_uniprot_sprot sp|P58818|PHR_METTM 20 474 + 455 Gaps:70 98.42 444 41.88 1e-83 Deoxyribodipyrimidine photo-lyase OS Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) GN phr PE 1 SV 2
blastp_uniprot_sprot sp|P12769|PHR_METTH 36 477 + 442 Gaps:52 95.28 445 41.27 2e-80 Deoxyribodipyrimidine photo-lyase OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN phr PE 3 SV 2
blastp_uniprot_sprot sp|P27526|PHR_NEUCR 36 479 + 444 Gaps:85 69.63 642 26.62 5e-07 Deoxyribodipyrimidine photo-lyase OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN phr-1 PE 3 SV 1
rpsblast_cdd gnl|CDD|129679 18 471 + 454 Gaps:18 99.12 454 52.89 1e-160 TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_cdd gnl|CDD|30764 34 486 + 453 Gaps:48 91.76 461 25.30 6e-48 COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|202632 241 468 + 228 Gaps:75 98.91 276 26.74 4e-44 pfam03441 FAD_binding_7 FAD binding domain of DNA photolyase.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 241 483 243 PF03441 none FAD binding domain of DNA photolyase IPR005101
Pfam 36 202 167 PF00875 none DNA photolyase IPR006050
SUPERFAMILY 227 482 256 SSF48173 none none IPR005101
Gene3D 228 321 94 G3DSA:1.25.40.80 none none none
PANTHER 20 491 472 PTHR10211:SF0 none none none
PANTHER 20 491 472 PTHR10211 none none IPR008148
ProSitePatterns 313 327 15 PS01083 none DNA photolyases class 2 signature 1. IPR008148
ProSiteProfiles 34 171 138 PS51645 none Photolyase/cryptochrome alpha/beta domain profile. IPR006050
TIGRFAM 19 470 452 TIGR00591 none phr2: deoxyribodipyrimidine photolyase IPR008148
SUPERFAMILY 35 221 187 SSF52425 none none IPR006050
ProSitePatterns 435 454 20 PS01084 none DNA photolyases class 2 signature 2. IPR008148
Gene3D 322 487 166 G3DSA:1.10.579.10 none none none
Gene3D 35 162 128 G3DSA:3.40.50.620 none none IPR014729

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting