Protein : Qrob_P0465630.2 Q. robur
Protein Identifier  ? Qrob_P0465630.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K01696 - tryptophan synthase beta chain [EC:4.2.1.20] Code Enzyme  EC:4.2.1.20
Gene Prediction Quality  validated Protein length 

Sequence

Length: 466  
Kegg Orthology  K01696
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0004834 tryptophan synthase activity Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
GO:0006568 tryptophan metabolic process The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
GO:0000162 tryptophan biosynthetic process The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101220286 39 465 + 427 Gaps:1 90.25 472 84.98 0.0 tryptophan synthase beta chain 2 chloroplastic-like
blastp_kegg lcl|cmo:103494920 39 465 + 427 Gaps:1 90.25 472 84.98 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|pxb:103948784 11 465 + 455 Gaps:9 95.34 472 81.33 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|pper:PRUPE_ppa005257mg 42 465 + 424 Gaps:2 90.64 470 83.80 0.0 hypothetical protein
blastp_kegg lcl|pxb:103934558 11 465 + 455 Gaps:9 95.34 472 80.89 0.0 tryptophan synthase beta chain 1-like
blastp_kegg lcl|pmum:103326389 42 465 + 424 Gaps:2 90.64 470 83.57 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|mus:103980825 6 465 + 460 Gaps:7 97.88 471 79.39 0.0 tryptophan synthase beta chain 1
blastp_kegg lcl|sly:101254921 25 465 + 441 Gaps:7 97.37 456 81.08 0.0 tryptophan synthase beta chain 2 chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10008204mg 1 465 + 465 Gaps:4 100.00 465 77.85 0.0 hypothetical protein
blastp_kegg lcl|fve:101300988 67 465 + 399 none 97.08 411 88.22 0.0 tryptophan synthase beta chain 2 chloroplastic-like
blastp_pdb 1x1q_B 70 463 + 394 Gaps:7 93.54 418 62.40 7e-174 mol:protein length:418 tryptophan synthase beta chain
blastp_pdb 1x1q_A 70 463 + 394 Gaps:7 93.54 418 62.40 7e-174 mol:protein length:418 tryptophan synthase beta chain
blastp_pdb 2o2j_B 66 461 + 396 Gaps:8 93.36 422 58.88 3e-162 mol:protein length:422 Tryptophan synthase beta chain
blastp_pdb 2o2j_A 66 461 + 396 Gaps:8 93.36 422 58.88 3e-162 mol:protein length:422 Tryptophan synthase beta chain
blastp_pdb 2o2e_B 66 461 + 396 Gaps:8 93.36 422 58.88 3e-162 mol:protein length:422 Tryptophan synthase beta chain
blastp_pdb 2o2e_A 66 461 + 396 Gaps:8 93.36 422 58.88 3e-162 mol:protein length:422 Tryptophan synthase beta chain
blastp_pdb 1v8z_D 76 461 + 386 Gaps:5 98.20 388 59.32 3e-162 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_pdb 1v8z_C 76 461 + 386 Gaps:5 98.20 388 59.32 3e-162 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_pdb 1v8z_B 76 461 + 386 Gaps:5 98.20 388 59.32 3e-162 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_pdb 1v8z_A 76 461 + 386 Gaps:5 98.20 388 59.32 3e-162 mol:protein length:388 Tryptophan synthase beta chain 1
blastp_uniprot_sprot sp|O50046|TRPB_CAMAC 1 465 + 465 Gaps:13 100.00 466 79.40 0.0 Tryptophan synthase beta chain 2 chloroplastic OS Camptotheca acuminata GN TSB PE 2 SV 1
blastp_uniprot_sprot sp|P25269|TRBP2_ARATH 52 465 + 414 none 87.16 475 84.30 0.0 Tryptophan synthase beta chain 2 chloroplastic OS Arabidopsis thaliana GN TSB2 PE 2 SV 2
blastp_uniprot_sprot sp|P14671|TRPB1_ARATH 46 465 + 420 Gaps:2 88.94 470 83.73 0.0 Tryptophan synthase beta chain 1 chloroplastic OS Arabidopsis thaliana GN TSB1 PE 2 SV 1
blastp_uniprot_sprot sp|P43284|TRPB2_MAIZE 67 465 + 399 none 90.07 443 84.71 0.0 Tryptophan synthase beta chain 2 chloroplastic (Fragment) OS Zea mays GN TSB2 PE 2 SV 1
blastp_uniprot_sprot sp|P43283|TRPB1_MAIZE 77 465 + 389 none 100.00 389 86.38 0.0 Tryptophan synthase beta chain 1 (Fragment) OS Zea mays GN TSB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8YQM6|TRPB2_NOSS1 67 463 + 397 none 96.13 413 76.57 0.0 Tryptophan synthase beta chain 2 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN trpB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q3MBV3|TRPB_ANAVT 68 463 + 396 none 95.88 413 76.52 0.0 Tryptophan synthase beta chain OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN trpB PE 3 SV 1
blastp_uniprot_sprot sp|Q118P8|TRPB_TRIEI 68 464 + 397 none 97.07 409 75.57 0.0 Tryptophan synthase beta chain OS Trichodesmium erythraeum (strain IMS101) GN trpB PE 3 SV 1
blastp_uniprot_sprot sp|Q8YZP7|TRPB1_NOSS1 67 463 + 397 none 97.07 409 76.07 0.0 Tryptophan synthase beta chain 1 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN trpB1 PE 3 SV 1
blastp_uniprot_sprot sp|Q59992|TRPB_SYNY3 68 465 + 398 none 96.60 412 74.87 0.0 Tryptophan synthase beta chain OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN trpB PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 70 465 396 PTHR10314:SF76 none none none
SUPERFAMILY 70 462 393 SSF53686 none none IPR001926
Gene3D 171 249 79 G3DSA:3.40.50.1100 none none none
PANTHER 70 465 396 PTHR10314 none none none
PIRSF 58 465 408 PIRSF001413 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" none IPR023026
ProSitePatterns 153 167 15 PS00168 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" Tryptophan synthase beta chain pyridoxal-phosphate attachment site. IPR006653
Gene3D 250 464 215 G3DSA:3.40.50.1100 none none none
Pfam 136 449 314 PF00291 none Pyridoxal-phosphate dependent enzyme IPR001926
TIGRFAM 74 462 389 TIGR00263 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" trpB: tryptophan synthase, beta subunit IPR006654

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting