Protein : Qrob_P0464510.2 Q. robur
Protein Identifier  ? Qrob_P0464510.2 Organism . Name  Quercus robur
Score  88.3 Score Type  egn
Protein Description  (M=2) K02969 - small subunit ribosomal protein S20e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 126  
Kegg Orthology  K02969
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1499710 1 125 + 125 Gaps:1 100.00 124 87.90 9e-70 40S ribosomal protein S20 putative
blastp_kegg lcl|cic:CICLE_v10006225mg 7 125 + 119 Gaps:1 96.72 122 88.14 2e-67 hypothetical protein
blastp_kegg lcl|cit:102621376 7 125 + 119 Gaps:1 96.72 122 88.14 2e-67 40S ribosomal protein S20-2-like
blastp_kegg lcl|tcc:TCM_014967 7 125 + 119 Gaps:1 96.72 122 88.98 2e-67 Ribosomal protein S10p/S20e family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa013445mg 6 125 + 120 none 98.36 122 85.00 7e-67 hypothetical protein
blastp_kegg lcl|pmum:103333328 6 125 + 120 Gaps:2 98.36 122 87.50 1e-66 40S ribosomal protein S20-2
blastp_kegg lcl|cmo:103504663 7 124 + 118 Gaps:1 96.69 121 88.03 1e-66 40S ribosomal protein S20-2
blastp_kegg lcl|pmum:103333327 6 125 + 120 none 98.36 122 84.17 2e-66 40S ribosomal protein S20-2-like
blastp_kegg lcl|pxb:103963423 7 125 + 119 Gaps:1 96.72 122 87.29 2e-66 40S ribosomal protein S20-2
blastp_kegg lcl|pxb:103961975 7 125 + 119 Gaps:1 96.72 122 87.29 2e-66 40S ribosomal protein S20-2
blastp_pdb 3iz6_J 1 124 + 124 Gaps:3 99.22 128 74.02 3e-62 mol:protein length:128 40S ribosomal protein S20 (S10p)
blastp_pdb 2zkq_j 20 125 + 106 none 89.08 119 75.47 4e-54 mol:protein length:119 40S Ribosomal protein S20e
blastp_pdb 2xzn_J 19 123 + 105 Gaps:3 90.00 120 56.48 3e-35 mol:protein length:120 RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
blastp_pdb 2xzm_J 19 123 + 105 Gaps:3 90.00 120 56.48 3e-35 mol:protein length:120 RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
blastp_pdb 1s1h_J 25 124 + 100 none 100.00 100 58.00 5e-34 mol:protein length:100 40S ribosomal protein S20
blastp_pdb 3jyv_J 25 120 + 96 none 100.00 96 60.42 9e-34 mol:protein length:96 40S ribosomal protein S20
blastp_pdb 3u5g_U 27 125 + 99 none 81.82 121 57.58 2e-33 mol:protein length:121 40S ribosomal protein S20
blastp_pdb 3u5c_U 27 125 + 99 none 81.82 121 57.58 2e-33 mol:protein length:121 40S ribosomal protein S20
blastp_pdb 3o30_N 27 125 + 99 none 81.82 121 57.58 2e-33 mol:protein length:121 40S ribosomal protein S20
blastp_pdb 3o2z_N 27 125 + 99 none 81.82 121 57.58 2e-33 mol:protein length:121 40S ribosomal protein S20
blastp_uniprot_sprot sp|P49200|RS201_ARATH 1 125 + 125 Gaps:1 100.00 124 83.06 8e-66 40S ribosomal protein S20-1 OS Arabidopsis thaliana GN RPS20A PE 2 SV 2
blastp_uniprot_sprot sp|Q9STY6|RS202_ARATH 1 125 + 125 Gaps:3 100.00 122 85.25 8e-66 40S ribosomal protein S20-2 OS Arabidopsis thaliana GN RPS20B PE 2 SV 1
blastp_uniprot_sprot sp|P35686|RS20_ORYSJ 1 124 + 124 Gaps:3 99.22 128 74.02 1e-61 40S ribosomal protein S20 OS Oryza sativa subsp. japonica GN RPS20 PE 2 SV 2
blastp_uniprot_sprot sp|P23403|RS20_XENLA 15 125 + 111 none 93.28 119 72.97 8e-54 40S ribosomal protein S20 OS Xenopus laevis GN rps20 PE 1 SV 1
blastp_uniprot_sprot sp|P60868|RS20_RAT 20 125 + 106 none 89.08 119 75.47 1e-53 40S ribosomal protein S20 OS Rattus norvegicus GN Rps20 PE 3 SV 1
blastp_uniprot_sprot sp|P60867|RS20_MOUSE 20 125 + 106 none 89.08 119 75.47 1e-53 40S ribosomal protein S20 OS Mus musculus GN Rps20 PE 2 SV 1
blastp_uniprot_sprot sp|Q4R5D0|RS20_MACFA 20 125 + 106 none 89.08 119 75.47 1e-53 40S ribosomal protein S20 OS Macaca fascicularis GN RPS20 PE 3 SV 1
blastp_uniprot_sprot sp|P60866|RS20_HUMAN 20 125 + 106 none 89.08 119 75.47 1e-53 40S ribosomal protein S20 OS Homo sapiens GN RPS20 PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZBH8|RS20_BOVIN 20 125 + 106 none 89.08 119 75.47 1e-53 40S ribosomal protein S20 OS Bos taurus GN RPS20 PE 3 SV 1
blastp_uniprot_sprot sp|Q5R924|RS20_PONAB 20 125 + 106 none 89.08 119 74.53 3e-52 40S ribosomal protein S20 OS Pongo abelii GN RPS20 PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 20 124 105 PTHR11700 none none IPR001848
SUPERFAMILY 25 122 98 SSF54999 none none IPR027486
Pfam 26 122 97 PF00338 none Ribosomal protein S10p/S20e IPR027486
Gene3D 23 124 102 G3DSA:3.30.70.600 none none IPR027486
PRINTS 82 96 15 PR00971 none Ribosomal protein S10 family signature IPR001848
PRINTS 60 75 16 PR00971 none Ribosomal protein S10 family signature IPR001848
PRINTS 25 38 14 PR00971 none Ribosomal protein S10 family signature IPR001848
TIGRFAM 24 122 99 TIGR01046 none uS10_euk_arch: ribosomal protein uS10 IPR005729

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044

0 Targeting