Protein : Qrob_P0463770.2 Q. robur
Protein Identifier  ? Qrob_P0463770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K03029 - 26S proteasome regulatory subunit N10 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 307  
Kegg Orthology  K03029
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO:0008540 proteasome regulatory particle, base subcomplex The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103436261 1 295 + 295 Gaps:22 78.05 401 71.57 2e-134 26S proteasome non-ATPase regulatory subunit 4 homolog
blastp_kegg lcl|pper:PRUPE_ppa006553mg 1 306 + 306 Gaps:22 80.30 406 72.09 8e-132 hypothetical protein
blastp_kegg lcl|pmum:103334811 1 299 + 299 Gaps:21 78.82 406 72.50 5e-131 26S proteasome non-ATPase regulatory subunit 4 homolog
blastp_kegg lcl|tcc:TCM_006649 1 305 + 305 Gaps:13 79.70 399 73.58 2e-126 26S proteasome non-ATPase regulatory subunit 4
blastp_kegg lcl|cit:102609685 1 306 + 306 Gaps:21 80.25 405 70.77 1e-125 26S proteasome non-ATPase regulatory subunit 4 homolog
blastp_kegg lcl|mdm:103412488 1 306 + 306 Gaps:27 79.95 399 72.10 6e-123 26S proteasome non-ATPase regulatory subunit 4 homolog
blastp_kegg lcl|gmx:100791370 1 305 + 305 Gaps:28 79.15 398 65.71 1e-122 26S proteasome non-ATPase regulatory subunit 4-like
blastp_kegg lcl|vvi:100257366 1 304 + 304 Gaps:19 79.46 404 69.16 1e-122 26S proteasome non-ATPase regulatory subunit 4-like
blastp_kegg lcl|pxb:103942089 1 306 + 306 Gaps:27 88.61 360 71.47 5e-121 26S proteasome non-ATPase regulatory subunit 4 homolog
blastp_kegg lcl|cic:CICLE_v10028565mg 1 291 + 291 Gaps:20 78.83 392 71.52 6e-121 hypothetical protein
blastp_pdb 2x5n_A 3 122 + 120 Gaps:9 57.81 192 48.65 5e-25 mol:protein length:192 26S PROTEASOME REGULATORY SUBUNIT RPN10
blastp_uniprot_sprot sp|P55034|PSMD4_ARATH 1 301 + 301 Gaps:16 79.02 386 64.26 2e-110 26S proteasome non-ATPase regulatory subunit 4 homolog OS Arabidopsis thaliana GN RPN10 PE 1 SV 1
blastp_uniprot_sprot sp|P55035|PSMD4_DROME 3 286 + 284 Gaps:81 75.51 396 37.79 4e-43 26S proteasome non-ATPase regulatory subunit 4 OS Drosophila melanogaster GN Rpn10 PE 1 SV 2
blastp_uniprot_sprot sp|O94444|RPN10_SCHPO 3 174 + 172 Gaps:18 63.37 243 51.95 1e-41 26S proteasome regulatory subunit rpn10 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpn10 PE 1 SV 1
blastp_uniprot_sprot sp|O35226|PSMD4_MOUSE 3 297 + 295 Gaps:51 76.60 376 39.93 8e-40 26S proteasome non-ATPase regulatory subunit 4 OS Mus musculus GN Psmd4 PE 1 SV 1
blastp_uniprot_sprot sp|P55036|PSMD4_HUMAN 3 290 + 288 Gaps:62 74.80 377 41.49 5e-39 26S proteasome non-ATPase regulatory subunit 4 OS Homo sapiens GN PSMD4 PE 1 SV 1
blastp_uniprot_sprot sp|Q58DA0|PSMD4_BOVIN 3 290 + 288 Gaps:62 73.82 382 41.49 6e-39 26S proteasome non-ATPase regulatory subunit 4 OS Bos taurus GN PSMD4 PE 2 SV 1
blastp_uniprot_sprot sp|Q553E0|PSMD4_DICDI 1 275 + 275 Gaps:81 70.49 349 40.65 7e-35 26S proteasome non-ATPase regulatory subunit 4 OS Dictyostelium discoideum GN psmD4 PE 2 SV 1
blastp_uniprot_sprot sp|A2A3N6|PIPSL_HUMAN 3 290 + 288 Gaps:26 32.71 862 39.36 1e-33 Putative PIP5K1A and PSMD4-like protein OS Homo sapiens GN PIPSL PE 5 SV 1
blastp_uniprot_sprot sp|O17453|PSMD4_SCHMA 3 292 + 290 Gaps:91 77.38 420 31.69 6e-31 26S proteasome non-ATPase regulatory subunit 4 OS Schistosoma mansoni PE 2 SV 2
blastp_uniprot_sprot sp|P38886|RPN10_YEAST 3 156 + 154 Gaps:4 57.46 268 42.21 1e-27 26S proteasome regulatory subunit RPN10 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPN10 PE 1 SV 3
rpsblast_cdd gnl|CDD|29225 2 108 + 107 Gaps:1 56.68 187 57.55 1e-35 cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association..
rpsblast_cdd gnl|CDD|34749 3 182 + 180 Gaps:19 66.26 243 47.20 1e-30 COG5148 RPN10 26S proteasome regulatory complex subunit RPN10/PSMD4 [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|38095 2 188 + 187 Gaps:11 68.73 259 53.37 3e-46 KOG2884 KOG2884 KOG2884 26S proteasome regulatory complex subunit RPN10/PSMD4 [Posttranslational modification protein turnover chaperones].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 1 109 109 PS50234 none VWFA domain profile. IPR002035
SMART 143 162 20 SM00726 none Ubiquitin-interacting motif. IPR003903
SMART 229 248 20 SM00726 none Ubiquitin-interacting motif. IPR003903
Gene3D 4 75 72 G3DSA:3.40.50.410 none none IPR002035
SUPERFAMILY 2 96 95 SSF53300 none none IPR002035
Coils 153 174 22 Coil none none none
ProSiteProfiles 143 162 20 PS50330 none Ubiquitin-interacting motif (UIM) domain profile. IPR003903
Pfam 145 158 14 PF02809 none Ubiquitin interaction motif IPR003903
Pfam 230 244 15 PF02809 none Ubiquitin interaction motif IPR003903
PANTHER 2 306 305 PTHR10223 none none IPR027040
ProSiteProfiles 229 248 20 PS50330 none Ubiquitin-interacting motif (UIM) domain profile. IPR003903

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting