Protein : Qrob_P0462580.2 Q. robur
Protein Identifier  ? Qrob_P0462580.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR10476:SF2 - CHARGED MULTIVESICULAR BODY PROTEIN 1A Gene Prediction Quality  validated
Protein length 

Sequence

Length: 93  
Kegg Orthology  K12197
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102583560 1 81 + 81 none 39.90 203 88.89 1e-43 charged multivesicular body protein 1-like
blastp_kegg lcl|sly:101260829 1 81 + 81 none 39.90 203 88.89 1e-43 charged multivesicular body protein 1-like
blastp_kegg lcl|sot:102596846 1 81 + 81 none 39.90 203 88.89 2e-43 charged multivesicular body protein 1-like
blastp_kegg lcl|sly:101247200 1 81 + 81 none 39.90 203 88.89 2e-43 charged multivesicular body protein 1-like
blastp_kegg lcl|mdm:103445538 1 90 + 90 Gaps:2 51.76 170 84.09 6e-43 charged multivesicular body protein 1-like
blastp_kegg lcl|mus:103978155 1 80 + 80 none 39.22 204 88.75 3e-42 charged multivesicular body protein 1-like
blastp_kegg lcl|mus:103975123 1 81 + 81 none 39.90 203 87.65 3e-42 charged multivesicular body protein 1-like
blastp_kegg lcl|ath:AT1G17730 2 81 + 80 none 39.41 203 87.50 4e-42 VPS46.1 ESCRT-related protein CHMP1B
blastp_kegg lcl|aly:ARALYDRAFT_889183 2 81 + 80 none 39.41 203 86.25 1e-41 SNF7 family protein
blastp_kegg lcl|smo:SELMODRAFT_125104 1 80 + 80 none 39.02 205 82.50 4e-40 hypothetical protein
blastp_uniprot_sprot sp|O96552|CHMP1_DICDI 2 81 + 80 none 41.67 192 57.50 1e-27 Charged multivesicular body protein 1 OS Dictyostelium discoideum GN chmp1 PE 3 SV 1
blastp_uniprot_sprot sp|Q6PHF0|CHM1A_DANRE 2 77 + 76 none 38.38 198 55.26 1e-21 Charged multivesicular body protein 1a OS Danio rerio GN chmp1a PE 2 SV 1
blastp_uniprot_sprot sp|Q921W0|CHM1A_MOUSE 2 77 + 76 none 38.78 196 51.32 3e-20 Charged multivesicular body protein 1a OS Mus musculus GN Chmp1a PE 1 SV 1
blastp_uniprot_sprot sp|Q6NUD8|CHM1A_XENLA 2 77 + 76 none 38.78 196 50.00 5e-20 Charged multivesicular body protein 1a OS Xenopus laevis GN chmp1a PE 2 SV 1
blastp_uniprot_sprot sp|O60074|DID2_SCHPO 2 81 + 80 none 40.00 200 52.50 2e-19 Vacuolar protein-sorting-associated protein 46 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN did2 PE 3 SV 2
blastp_uniprot_sprot sp|Q5R605|CHM1A_PONAB 2 77 + 76 none 38.78 196 51.32 2e-19 Charged multivesicular body protein 1a OS Pongo abelii GN CHMP1A PE 2 SV 1
blastp_uniprot_sprot sp|Q9HD42|CHM1A_HUMAN 2 77 + 76 none 38.78 196 51.32 2e-19 Charged multivesicular body protein 1a OS Homo sapiens GN CHMP1A PE 1 SV 1
blastp_uniprot_sprot sp|P69771|DID2_YEAST 2 81 + 80 Gaps:1 38.73 204 51.90 1e-16 Vacuolar protein-sorting-associated protein 46 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN DID2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7ZVB1|CHM1B_DANRE 3 81 + 79 none 39.70 199 54.43 2e-15 Charged multivesicular body protein 1b OS Danio rerio GN chmp1b PE 2 SV 1
blastp_uniprot_sprot sp|Q7LBR1|CHM1B_HUMAN 3 81 + 79 none 39.70 199 55.70 1e-13 Charged multivesicular body protein 1b OS Homo sapiens GN CHMP1B PE 1 SV 1
rpsblast_kog gnl|CDD|38442 1 81 + 81 none 39.90 203 66.67 3e-25 KOG3232 KOG3232 KOG3232 Vacuolar assembly/sorting protein DID2 [Intracellular trafficking secretion and vesicular transport].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 82 82 PTHR10476 none none none
PANTHER 1 82 82 PTHR10476:SF2 none none none
Coils 14 35 22 Coil none none none
Pfam 2 78 77 PF03357 none Snf7 IPR005024

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting