Protein : Qrob_P0462550.2 Q. robur
Protein Identifier  ? Qrob_P0462550.2 Organism . Name  Quercus robur
Score  83.1 Score Type  egn
Protein Description  (M=1) K12883 - nuclear cap-binding protein subunit 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 212  
Kegg Orthology  K12883
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000339 RNA cap binding Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule.
GO:0005846 nuclear cap binding complex A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export.
GO:0045292 mRNA cis splicing, via spliceosome The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328407 1 130 + 130 none 51.38 253 91.54 6e-82 nuclear cap-binding protein subunit 2
blastp_kegg lcl|bdi:100823085 1 130 + 130 none 54.17 240 90.00 9e-82 nuclear cap-binding protein subunit 2-like
blastp_kegg lcl|pxb:103945448 1 130 + 130 none 51.59 252 90.77 4e-81 nuclear cap-binding protein subunit 2-like
blastp_kegg lcl|mdm:103405639 1 130 + 130 none 51.59 252 90.77 5e-81 nuclear cap-binding protein subunit 2-like
blastp_kegg lcl|fve:101310621 1 130 + 130 none 51.18 254 90.77 5e-81 nuclear cap-binding protein subunit 2-like
blastp_kegg lcl|vvi:100265980 1 130 + 130 none 51.38 253 88.46 6e-81 nuclear cap-binding protein subunit 2-like
blastp_kegg lcl|pxb:103947902 1 130 + 130 none 51.59 252 90.00 1e-80 nuclear cap-binding protein subunit 2-like
blastp_kegg lcl|rcu:RCOM_1172990 1 141 + 141 none 55.29 255 83.69 1e-80 20 kD nuclear cap binding protein putative
blastp_kegg lcl|pper:PRUPE_ppa010346mg 1 130 + 130 none 51.38 253 90.00 2e-80 hypothetical protein
blastp_kegg lcl|zma:100280855 1 130 + 130 none 53.72 242 87.69 2e-80 pco131956 LOC100280855
blastp_pdb 3fey_B 10 130 + 121 none 77.56 156 67.77 1e-54 mol:protein length:156 Nuclear cap-binding protein subunit 2
blastp_pdb 3fex_B 10 130 + 121 none 77.56 156 67.77 1e-54 mol:protein length:156 Nuclear cap-binding protein subunit 2
blastp_pdb 1n54_B 10 130 + 121 none 77.56 156 67.77 1e-54 mol:protein length:156 20 kDa nuclear cap binding protein
blastp_pdb 1n52_B 10 130 + 121 none 77.56 156 67.77 1e-54 mol:protein length:156 20 kDa nuclear cap binding protein
blastp_pdb 1h2v_Z 10 130 + 121 none 77.56 156 67.77 1e-54 mol:protein length:156 20 KDA NUCLEAR CAP BINDING PROTEIN
blastp_pdb 1h2u_Y 10 130 + 121 none 77.56 156 67.77 1e-54 mol:protein length:156 20 KDA NUCLEAR CAP BINDING PROTEIN
blastp_pdb 1h2u_X 10 130 + 121 none 77.56 156 67.77 1e-54 mol:protein length:156 20 KDA NUCLEAR CAP BINDING PROTEIN
blastp_pdb 1h2t_Z 10 130 + 121 none 77.56 156 67.77 1e-54 mol:protein length:156 20 KDA NUCLEAR CAP BINDING PROTEIN
blastp_pdb 1h6k_Z 16 114 + 99 Gaps:1 100.00 98 66.33 4e-40 mol:protein length:98 20 KDA NUCLEAR CAP BINDING PROTEIN
blastp_pdb 1h6k_Y 16 114 + 99 Gaps:1 100.00 98 66.33 4e-40 mol:protein length:98 20 KDA NUCLEAR CAP BINDING PROTEIN
blastp_uniprot_sprot sp|Q84L14|NCBP2_ORYSJ 1 130 + 130 none 53.50 243 87.69 9e-82 Nuclear cap-binding protein subunit 2 OS Oryza sativa subsp. japonica GN CBP20 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XFD1|NCBP2_ARATH 1 130 + 130 none 50.58 257 88.46 2e-80 Nuclear cap-binding protein subunit 2 OS Arabidopsis thaliana GN CBP20 PE 1 SV 1
blastp_uniprot_sprot sp|B7P877|NCBP2_IXOSC 11 130 + 120 none 78.95 152 66.67 5e-54 Nuclear cap-binding protein subunit 2 OS Ixodes scapularis GN Cbp20 PE 3 SV 1
blastp_uniprot_sprot sp|P52298|NCBP2_HUMAN 10 130 + 121 none 77.56 156 67.77 5e-54 Nuclear cap-binding protein subunit 2 OS Homo sapiens GN NCBP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZBJ1|NCBP2_BOVIN 10 130 + 121 none 77.56 156 67.77 5e-54 Nuclear cap-binding protein subunit 2 OS Bos taurus GN NCBP2 PE 2 SV 1
blastp_uniprot_sprot sp|B1WC40|NCBP2_RAT 10 130 + 121 none 77.56 156 67.77 5e-54 Nuclear cap-binding protein subunit 2 OS Rattus norvegicus GN Ncbp2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CQ49|NCBP2_MOUSE 10 130 + 121 none 77.56 156 67.77 5e-54 Nuclear cap-binding protein subunit 2 OS Mus musculus GN Ncbp2 PE 1 SV 1
blastp_uniprot_sprot sp|Q177H0|NCBP2_AEDAE 1 130 + 130 none 81.76 159 60.77 4e-53 Nuclear cap-binding protein subunit 2 OS Aedes aegypti GN Cbp20 PE 3 SV 1
blastp_uniprot_sprot sp|Q1HE01|NCBP2_BOMMO 10 130 + 121 none 78.57 154 62.81 2e-52 Nuclear cap-binding protein subunit 2 OS Bombyx mori PE 2 SV 1
blastp_uniprot_sprot sp|Q7QCB6|NCBP2_ANOGA 1 130 + 130 none 79.75 163 60.77 4e-52 Nuclear cap-binding protein subunit 2 OS Anopheles gambiae GN Cbp20 PE 3 SV 3

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 35 108 74 SM00360 none RNA recognition motif IPR000504
SUPERFAMILY 26 129 104 SSF54928 none none none
Gene3D 8 118 111 G3DSA:3.30.70.330 none none IPR012677
PANTHER 1 130 130 PTHR18847:SF0 none none none
PANTHER 1 130 130 PTHR18847 none none IPR027157
Pfam 36 106 71 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
ProSiteProfiles 34 112 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting